View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17491_low_6 (Length: 308)
Name: NF17491_low_6
Description: NF17491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17491_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 24891024 - 24890751
Alignment:
| Q |
10 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgataggattccaacaccaaaacctc |
109 |
Q |
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| T |
24891024 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgaaaggattccaacaccaaaacctc |
24890925 |
T |
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| Q |
110 |
caacaacaaaaacccttgtagaaaaactccccaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
209 |
Q |
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|||||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890924 |
caacaacaaaaaaccttatagaaaaactcctcaaagaagcttctg---------attcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
24890834 |
T |
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| Q |
210 |
agcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaaca |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||| |
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| T |
24890833 |
tgcatccgagagcgaaacaaatagacggtgtatcgaatcggcaggcgctgtcgagtttttagcatcaatagtaacacaaaaca |
24890751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 24906402 - 24906675
Alignment:
| Q |
10 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgataggattccaacaccaaaacctc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24906402 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgaaaggattccaacaccaaaacctc |
24906501 |
T |
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| Q |
110 |
caacaacaaaaacccttgtagaaaaactccccaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
209 |
Q |
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| T |
24906502 |
caacaacaaaaatccttatagaaaaactcctcaaagaagcttct---------gattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
24906592 |
T |
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| Q |
210 |
agcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaaca |
292 |
Q |
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|| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||| |
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| T |
24906593 |
tgcctctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaaca |
24906675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 24898943 - 24899216
Alignment:
| Q |
10 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgataggattccaacaccaaaacctc |
109 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |
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| T |
24898943 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttttggaattgaaaggattccaactccaaaacctc |
24899042 |
T |
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| Q |
110 |
caacaacaaaaacccttgtagaaaaactccccaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
209 |
Q |
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|||||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899043 |
caacaacaaaaatccttatagaaaaactcctcaaagaagcttct---------gattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
24899133 |
T |
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| Q |
210 |
agcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaaca |
292 |
Q |
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|| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||| |
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| T |
24899134 |
tgcttctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaaca |
24899216 |
T |
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