View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17492_high_10 (Length: 360)
Name: NF17492_high_10
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 9151752 - 9151419
Alignment:
| Q |
11 |
cacagaactccccttcctcaccggaaaatacgtatgcctcactcctccatgttccggatcagccgcaatgccacgcaggtatagcggattctcatccacc |
110 |
Q |
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| T |
9151752 |
cacagaactccccttcctcaccggaaaatacgtatgcctcactcctccatgttccggatcagccgcaatgccacgcaggtatagcggattctcatccacc |
9151653 |
T |
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| Q |
111 |
ggagtaaacttcatttctatattcaaagctgtatccggcttcggtggtttaccggatgaagcaacaataggaaaccaaccggaaatcaactctccggtag |
210 |
Q |
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| T |
9151652 |
ggagtaaacttcatttctatattcaaagctgtatccggcttcggtggtttaccggatgaagcaacaataggaaaccaaccggaaatcaactctccggtag |
9151553 |
T |
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| Q |
211 |
caattctcttggccggaatcttcaccattcccataacttcagcaccaaacacatcatcatctttaacacgaatctccaaatcaataaccggatgtgctaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9151552 |
caattctcttggccggaatcttcaccattcccataacttcagcaccaaacacatcatcatctttaacacgaatctccaaatcaataaccggatgtgctaa |
9151453 |
T |
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| Q |
311 |
cggaatgtgaaaccgttccttccactcaggattc |
344 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9151452 |
cggaatgtgaaaccgttccttccactcaggattc |
9151419 |
T |
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