View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17492_low_1 (Length: 551)
Name: NF17492_low_1
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 34846524 - 34846004
Alignment:
| Q |
18 |
attcatgtgtcatgtaatatgaacctccattctccatgatcattccatcataatttaacacat-aataaatgttgctacctgatcatatggtagtcttag |
116 |
Q |
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| T |
34846524 |
attcatgtgtcatgtaatatgaacctccattctccatgatcattccatcataatttaacacattaataaatgttgctacctgatcatatggtagtcttag |
34846425 |
T |
|
| Q |
117 |
gtatccaatgaaaaatcagaagatgccaa-ctaaaatgagttatggaaggatttttgttatgtaaacataagtttgtagtagataaaattgaattctaac |
215 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34846424 |
gtatccaatgaaaaatcagaagatgccaaactaaaatgagttatggaaggatttttgttatgtaaacataagtttgtaggagataaaattgaattctaac |
34846325 |
T |
|
| Q |
216 |
gatgtttagttgaatctaccggctatcgcaaaaagttgaactcatgatttcattatcagttaacttc-aaaccatctcactcttgtccgagtttatattt |
314 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
34846324 |
gatgtttagttgaacctaccggctatcgcaaagagttgaactcatgatctcattatcacttaacttcaaaaccatctcactcttgtccgagttcatattt |
34846225 |
T |
|
| Q |
315 |
taagttaaaagaaattaattaccaaaaatgaataagttcttttnnnnnnnnnttaagtcctataaaaagtgattttattttttcatcaatttctataaac |
414 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34846224 |
taagttaaaagaaattaaataccaaaaatgaataagttcttttaaaaaaaaattaagtcctataaaaagtgattttattttttcatcaatttctataaac |
34846125 |
T |
|
| Q |
415 |
tatattgttccttttcctttaatatactcttgggagccatgaaaaatgtgatagttatcatttattactcatctttttcaaccagtttttgagaaaacta |
514 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34846124 |
tatattgttccttttcctttaatatacccttgggagccatgaaaaatgtgataattatcatttattactcatctttttcaaccagtttttgagaaaacta |
34846025 |
T |
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| Q |
515 |
gaaccatttcatagtcatatt |
535 |
Q |
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||||||||||||||||||||| |
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| T |
34846024 |
gaaccatttcatagtcatatt |
34846004 |
T |
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