View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17492_low_11 (Length: 353)
Name: NF17492_low_11
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 24256158 - 24256488
Alignment:
| Q |
7 |
acaaacaacacaactaagttgaaggaattcttttctgttgaatgtaacataacaacagtaccaaacaagatcataca---aaaatgtatgattgtacttg |
103 |
Q |
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| T |
24256158 |
acaaacaacacaactaagttgaaggaattcttttctgttgaatgtaacataacaacagtaccaaacgagatcatactttgaaaatgtatgattgtacttg |
24256257 |
T |
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| Q |
104 |
taagattaagatggtccctcaaatcaagtcttttattttcatttttagaattgaagaaaaaagaagaaatcatttaaaaatcatattcaatctctgacat |
203 |
Q |
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| T |
24256258 |
taagattaagatggtccctcaaatcaagtcttttattttcatttttagaattgaagaaaaaaga---aatcatttaaaaatcatattcaatctctgacat |
24256354 |
T |
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| Q |
204 |
acaagtccaaacagaagcagaaagcaaacgtcttgatttccaacctaacaccaacttattgttacccaactcttctaccctatacccatcgttgaataaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
24256355 |
acaagtccaaacagaagcagaaagcaaacgtcttgatttccaacctaacaccaacttattgttacccaactcttccaccctatacccatcgttaaataaa |
24256454 |
T |
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| Q |
304 |
cccaataacaactttgcttgacaatggttaccat |
337 |
Q |
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| T |
24256455 |
cccaataacaactttgcttgacaatggttaccat |
24256488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 32725338 - 32725469
Alignment:
| Q |
204 |
acaagtccaaacagaagcagaaagcaaacgtcttgatttccaacctaacaccaacttattgtt------acccaactcttctaccctatacccatcgttg |
297 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| | ||||| |||||| |||||||||||||| || |
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| T |
32725338 |
acaagtccaaagggaagcagaaagcaaacgtcttgatttccaatccaacaccaacttattactacccacacccacctcttcaaccctatacccatcatta |
32725437 |
T |
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| Q |
298 |
aataaacccaataacaactttgcttgacaatg |
329 |
Q |
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| T |
32725438 |
aaaagccctaacaacagctttgcttgacaatg |
32725469 |
T |
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