View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17492_low_14 (Length: 280)
Name: NF17492_low_14
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 25416316 - 25416066
Alignment:
| Q |
18 |
acataagagcgcgggaaaagcaagaatctttggcaccaaaagacgttactataaataagtttgtgtgtataccgatcggaagttgaaaaagagaggaaaa |
117 |
Q |
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| T |
25416316 |
acataagagcgcgggaaaagcaagaatctttggcaccaaaagacgttactataaataagtttgtgtgtataccgatcggaagttgaaaaagagaggaaaa |
25416217 |
T |
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| Q |
118 |
agatgcagattcgtatacagtgcaattgtgaggaaggaaactgtgtggaatggggcattgttgaactgcaaggagttgttgaaccacaacctggttttca |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25416216 |
agatgcagattcgtgtacagtgcaattgtgaggaaggaaactgtgtggaatggggcattgttgaactgcaaggagttgttgaaccacagcctggttttca |
25416117 |
T |
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| Q |
218 |
ggattcccttgccaaccttcaaattggcactctctgtcgtccttcatctca |
268 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
25416116 |
ggattcccttgccaaccttcaaattggcactctctgccgtccttcttctca |
25416066 |
T |
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