View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17492_low_16 (Length: 238)
Name: NF17492_low_16
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 25717712 - 25717493
Alignment:
| Q |
3 |
ataccaatctaacagttttaacaatttaactgtttcaacaattgaaacaccagtacatcaatgaaaaacaggtctaatgtaagtgtcacatctgtttatg |
102 |
Q |
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| T |
25717712 |
ataccaatctaacagttttaccaatttaactgtttcgacaattgaaacaccagtacatcaatgaaaaacaggtctaatgtaagtgtcacatctgtttatg |
25717613 |
T |
|
| Q |
103 |
ttgttttttagacataataatccagcttctacactaagcgtgtcaatcgcgctaaaagattaaaaatgaatcgaattgttaaaccttaacatcgttcgtc |
202 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25717612 |
ttgttttttagacataataatccagcttctacactgagtgtgtcaatcgcgctaaaagattaaaaatgaattgaattgttaaaccttaacatcgttcgtc |
25717513 |
T |
|
| Q |
203 |
tattttatgaatacccatct |
222 |
Q |
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|||||||||||||||||||| |
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| T |
25717512 |
tattttatgaatacccatct |
25717493 |
T |
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