View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17492_low_17 (Length: 224)
Name: NF17492_low_17
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 52820759 - 52820958
Alignment:
| Q |
19 |
aatgggtggtggtaaggagggggatagacaactggcggaggaggagaattatagtagtatggaggtggagtgtacttgggtggtggtggagactgatagt |
118 |
Q |
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| T |
52820759 |
aatgggtggtggtaaggagggggatatacaactggcggaggaggagaattatagtagtatggaggtggagtgtacttgggtggtggtggagactgatagt |
52820858 |
T |
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| Q |
119 |
agtacggtgttggtggaggtggagattttacaggaggtggtggtgaattgtagtagtaaggtggatgaggtaccggagatggaggaggaggagacttgta |
218 |
Q |
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| T |
52820859 |
agtacggtgttggtggaggtggagattttacaggaggtggtggtgaattgtagtagtaaggtggatgaggtaccggagatggaggaggaggagacttgta |
52820958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 11880547 - 11880459
Alignment:
| Q |
40 |
ggatagacaactggcggaggaggagaattatagtagtatggaggtggagtgtacttgggtggtggtggagactgatagtagtacggtgt |
128 |
Q |
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| T |
11880547 |
ggatacacaacaggtggaggaggagaattgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgt |
11880459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 11903047 - 11902959
Alignment:
| Q |
40 |
ggatagacaactggcggaggaggagaattatagtagtatggaggtggagtgtacttgggtggtggtggagactgatagtagtacggtgt |
128 |
Q |
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| T |
11903047 |
ggatacacaacaggtggaggaggagaattgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgt |
11902959 |
T |
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