View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17492_low_2 (Length: 547)

Name: NF17492_low_2
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17492_low_2
NF17492_low_2
[»] chr2 (6 HSPs)
chr2 (18-540)||(31623182-31623701)
chr2 (18-116)||(31605010-31605107)
chr2 (37-105)||(31612758-31612826)
chr2 (25-174)||(31607232-31607380)
chr2 (112-175)||(31618659-31618723)
chr2 (18-54)||(31618988-31619024)
[»] chr8 (5 HSPs)
chr8 (252-328)||(16221874-16221950)
chr8 (253-328)||(40114431-40114506)
chr8 (252-327)||(41529018-41529093)
chr8 (250-328)||(36755191-36755269)
chr8 (253-328)||(24044244-24044317)
[»] chr5 (4 HSPs)
chr5 (250-328)||(32259395-32259473)
chr5 (252-327)||(42631240-42631315)
chr5 (253-328)||(9022816-9022891)
chr5 (185-226)||(1082418-1082459)
[»] scaffold0114 (1 HSPs)
scaffold0114 (252-328)||(34503-34579)
[»] chr3 (1 HSPs)
chr3 (252-328)||(50239341-50239417)
[»] chr1 (2 HSPs)
chr1 (250-328)||(49878060-49878138)
chr1 (256-328)||(45920630-45920702)
[»] scaffold0284 (1 HSPs)
scaffold0284 (252-328)||(2980-3056)
[»] chr6 (1 HSPs)
chr6 (251-328)||(14211598-14211675)
[»] chr4 (2 HSPs)
chr4 (252-328)||(6551989-6552065)
chr4 (253-328)||(312160-312235)
[»] scaffold0211 (1 HSPs)
scaffold0211 (256-328)||(20612-20687)
[»] chr7 (2 HSPs)
chr7 (184-230)||(30153146-30153192)
chr7 (253-322)||(7939633-7939702)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Complemental strand, 31623701 - 31623182
Alignment:
Q  18 aggttcaacattgtttaatgcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttatggtggagaatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31623701 aggttcaacattgtttaatgcacattaattaggagttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttatggtggagaatt 31623602  T
Q  118 tcagttttctttcattttaatgaagacgtagaatgaattggcaaatggattggaaataatgagcaagatcctcttcatttaacaaactaaatggaatatg 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  31623601 tcagttttctttcattttaatgaagacatagaatgaattggcaaatggattggaaataacgagcaagatcctcttcatttaacaaactaaatggagtatg 31623502  T
Q  218 caatttaaagagaactagtatggacacccgcagactagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaaca 317  Q
    ||||||||||||||||||| ||||||||| |    |||||||||| | ||||||||||||| |  ||||| || ||||||||||||||||||||||||||    
T  31623501 caatttaaagagaactagtgtggacacccacgagttagaatttcgtcatagttgagggagata--attatgatttatctagtgtcagttaaattcaaaca 31623404  T
Q  318 tgggataaaaccacctttattcaactaaaacaagattttacaccgattcatgctaaaacgatatgcatttgtgannnnnnnncgcaagccatttgtttgt 417  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||        ||||| ||||||||||||    
T  31623403 tgggataaaaccacatttattcaactaaaacaggattttacaccgattcatgctaaaccgatatgcatttgtga-tttttttcgcaaaccatttgtttgt 31623305  T
Q  418 agtataaacaaaaatgcacttttgaagcaactttcctttaaaattgacaacttacacatttaaacacactcagtaaaacgttgattttcatccaacgggg 517  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  31623304 agtataaaaaaaaatgcacttttgaagcaactttcctttaaaattaacaacttacacatttaaacacactctttaaaacgttgattttcatctaacgggg 31623205  T
Q  518 ttggagaccttccatctctgctc 540  Q
    ||||||||||||||||| |||||    
T  31623204 ttggagaccttccatctgtgctc 31623182  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 31605107 - 31605010
Alignment:
Q  18 aggttcaacattgtttaatgcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttatggtggagaat 116  Q
    |||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||| ||||||||||  ||||||| | |||||||| |||| ||||    
T  31605107 aggttcaacattgtttaaagcacattaattag-agttgttttaattaattttctcatgaaattaatggacgttgttttgggattcttattgtggggaat 31605010  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 31612826 - 31612758
Alignment:
Q  37 gcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattctta 105  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| | |||||||    
T  31612826 gcacattaattaggatttgttttaattaattttctcatgaaattaatggatattgttttggcattctta 31612758  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 31607380 - 31607232
Alignment:
Q  25 acattgtttaatgcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttatggtggagaatttcagttt 124  Q
    ||||||||||| ||||||||||||| | ||| ||||||||| | |  |||  ||||| ||||||||||||| |  ||||||| || | |||||| |||||    
T  31607380 acattgtttaaagcacattaattagaagttgatttaattaaatgt--cattaaattagtggatattgttttggcgttcttattgttgggaatttaagttt 31607283  T
Q  125 t-ctttcattttaatgaagacgtagaatgaattggcaaatggattggaaat 174  Q
    | |||||||||||||||||||||| | ||||||| ||||  ||||||||||    
T  31607282 ttctttcattttaatgaagacgtaaactgaattgtcaaaaagattggaaat 31607232  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 31618723 - 31618659
Alignment:
Q  112 agaatttcagtttt-ctttcattttaatgaagacgtagaatgaattggcaaatggattggaaata 175  Q
    |||||||||||||| |||||||||||||||||||||| |   || ||||||||||||| ||||||    
T  31618723 agaatttcagtttttctttcattttaatgaagacgtaaatcaaagtggcaaatggatttgaaata 31618659  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 31619024 - 31618988
Alignment:
Q  18 aggttcaacattgtttaatgcacattaattaggactt 54  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  31619024 aggttcaacattgtttaaagcacattaactaggactt 31618988  T

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Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 16221950 - 16221874
Alignment:
Q  252 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    ||||||||||| | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  16221950 ctagaatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 16221874  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 40114506 - 40114431
Alignment:
Q  253 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    |||||||||| | |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  40114506 tagaatttcgtcatagttgagggagacaatattatgatgtatttagtgtcagttaaattcaaacatgggataaaac 40114431  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 41529093 - 41529018
Alignment:
Q  252 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaa 327  Q
    ||||||||||| | |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  41529093 ctagaatttcgtcatagtcgagggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaa 41529018  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 36755269 - 36755191
Alignment:
Q  250 gactagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    ||||| ||||||| | |||||||||||||||||| ||| || |||  |||||||||||||||||||||||| |||||||    
T  36755269 gactaaaatttcgtcatagttgagggagacaataatatgatgtattcagtgtcagttaaattcaaacatggaataaaac 36755191  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 24044244 - 24044317
Alignment:
Q  253 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    |||||||||| | ||||| | ||||| ||||||||||| ||||  |||| ||||||||||||||||||||||||||    
T  24044244 tagaatttcgtcatagttaaaggagataatattataatgtatc--gtgttagttaaattcaaacatgggataaaac 24044317  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 32259473 - 32259395
Alignment:
Q  250 gactagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    ||||| ||||||| | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  32259473 gactaaaatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 32259395  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 42631240 - 42631315
Alignment:
Q  252 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaa 327  Q
    ||||||||||  | |||||||||||||||||||||  || |||||| |||||||||||||||||||||||||||||    
T  42631240 ctagaatttcatcatagttgagggagacaatattacgatgtatctaatgtcagttaaattcaaacatgggataaaa 42631315  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 9022816 - 9022891
Alignment:
Q  253 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    |||||||||| | ||||||| | |||||||||||| || ||| ||||||||||||||||||||||||| |||||||    
T  9022816 tagaatttcgtcatagttgaagaagacaatattatgatgtatttagtgtcagttaaattcaaacatggtataaaac 9022891  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 1082418 - 1082459
Alignment:
Q  185 atcctcttcatttaacaaactaaatggaatatgcaatttaaa 226  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||    
T  1082418 atcctcttcattttacaaaataaatggaagatgcaatttaaa 1082459  T

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Target: scaffold0114 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 34503 - 34579
Alignment:
Q  252 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    ||||||||||| | ||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  34503 ctagaatttcgtcatagttgatggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 34579  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 50239341 - 50239417
Alignment:
Q  252 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    ||||||||||| | | |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  50239341 ctagaatttcgtcatggttgagggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 50239417  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 49878060 - 49878138
Alignment:
Q  250 gactagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    ||||||||||||| | |||||||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||    
T  49878060 gactagaatttcgtcatagttgagggagacaatattatgacgtatatagtgtcagttaaattcaaacatgggataaaac 49878138  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 45920702 - 45920630
Alignment:
Q  256 aatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    ||||||| | |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  45920702 aatttcgtcatagttgagggagacaatattatgatgtatttagtgtcagttaaattcaaacatgggataaaac 45920630  T

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Target: scaffold0284 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 3056 - 2980
Alignment:
Q  252 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    ||||||||||| |  |||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  3056 ctagaatttcgtcaaagttgaggtagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 2980  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 14211675 - 14211598
Alignment:
Q  251 actagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    |||||||||||  | |||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |||||    
T  14211675 actagaatttcatcatagttgagggagacaatattatgatgtatctagtgttagttaaattcaaacatgggacaaaac 14211598  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 6551989 - 6552065
Alignment:
Q  252 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    ||||||||||  | |||| ||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||||    
T  6551989 ctagaatttcatcatagtcgagggagacaatattatgatgtatgtagtgtcagttaaattcaaacatgagataaaac 6552065  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 312160 - 312235
Alignment:
Q  253 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 328  Q
    |||||||||| | ||||||||||| |||||||||| || ||| || |||||||||||||||||| |||||||||||    
T  312160 tagaatttcgtcatagttgagggatacaatattatgatgtatttattgtcagttaaattcaaacgtgggataaaac 312235  T

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Target: scaffold0211 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 20687 - 20612
Alignment:
Q  256 aatttcgccctagttgagggagacaatattataatatatctagt---gtcagttaaattcaaacatgggataaaac 328  Q
    ||||||| | |||||||||||||||||||||| || ||| ||||   |||||||||||||||||||||||||||||    
T  20687 aatttcgtcatagttgagggagacaatattatgatgtatgtagtagtgtcagttaaattcaaacatgggataaaac 20612  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 30153146 - 30153192
Alignment:
Q  184 gatcctcttcatttaacaaactaaatggaatatgcaatttaaagaga 230  Q
    |||||||| |||||||||||  |||||||||||||||||| ||||||    
T  30153146 gatcctctccatttaacaaaacaaatggaatatgcaatttgaagaga 30153192  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 7939633 - 7939702
Alignment:
Q  253 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatggga 322  Q
    |||||||||| | || |||| ||||| |||| ||| || ||||  |||||||||||||||||||||||||    
T  7939633 tagaatttcgtcataattgaaggagataatagtatgatgtatccggtgtcagttaaattcaaacatggga 7939702  T

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