View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17492_low_21 (Length: 201)
Name: NF17492_low_21
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 6e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 12050965 - 12051046
Alignment:
| Q |
102 |
aaggattcggctacgcttatgaacctgaaagaaaggtacttccatcgaaggtgaataatgcaaaagctttgcatactattca |
183 |
Q |
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| T |
12050965 |
aaggattcggctacgcttatgaacctgaaagaaaggtacttccatcgaaggtgaataatgcaaaagctttgcatactattca |
12051046 |
T |
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Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 12050866 - 12050935
Alignment:
| Q |
12 |
gataattctaaaaatgattgaaaacatttccaaaagatagtagcaataatagagtaccaatttaaagtta |
81 |
Q |
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| T |
12050866 |
gataattctaaaaatgattcaaaacatttccaaaagatagtagcaataacagagtaccaatttaaagtta |
12050935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 12047486 - 12047531
Alignment:
| Q |
13 |
ataattctaaaaatgattgaaaacatttccaaaagatagtagcaata |
59 |
Q |
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|||||||||||||| ||| | |||||||||||||||||||||||||| |
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| T |
12047486 |
ataattctaaaaat-attcataacatttccaaaagatagtagcaata |
12047531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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