View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17492_low_3 (Length: 546)
Name: NF17492_low_3
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 45067674 - 45068012
Alignment:
| Q |
11 |
cagagacaatgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtcctt |
110 |
Q |
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| T |
45067674 |
cagagacaatgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggcaaaaatgggaaaaacaagaagtggttagcaatttagtcctt |
45067773 |
T |
|
| Q |
111 |
gcaattgaaccttttattcaatatcaatgacataaactccattaagttgaaaaataataattagaatttggacnnnnnnntctaaacgaatttctaaatg |
210 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
45067774 |
gcaactgaaccttttattcaatatgaatgacataaactccattaagttgaaaaataataattagaatttggacaaaaaagtctaaactaatttctaaatg |
45067873 |
T |
|
| Q |
211 |
attgaatgtctaatggaccatgaatacattaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatg |
310 |
Q |
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| T |
45067874 |
attgaatgtctaatggaccatgaatacattaccagggtctatgccatctgtgtttggaacgtccactggtgcaagaatagtaagtctatttataattatg |
45067973 |
T |
|
| Q |
311 |
ttactgaagatataaagtttaatcagaagaatgaaataa |
349 |
Q |
| |
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||||||||||||||||||||| ||||| |||| |||||| |
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| T |
45067974 |
ttactgaagatataaagtttagtcagatgaataaaataa |
45068012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 236 - 527
Target Start/End: Original strand, 45082921 - 45083212
Alignment:
| Q |
236 |
acattaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatca |
335 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082921 |
acattacctgggtctatgccatctgtgtttggaacgtccactggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaatca |
45083020 |
T |
|
| Q |
336 |
gaagaatgaaataacacacacatatagaaaataatgctttaaataaagttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggac |
435 |
Q |
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| T |
45083021 |
gaagaatgaaataacacacacatatagaaaataatgctttaaataaagttgagaaatttaaaaattgtgactcgtcaaacctgctgtaaactggatgtac |
45083120 |
T |
|
| Q |
436 |
aaaccaaaaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttca |
527 |
Q |
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| T |
45083121 |
aaaccaagaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatatatggcctagtgattttca |
45083212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 191 - 530
Target Start/End: Original strand, 45075451 - 45075785
Alignment:
| Q |
191 |
tctaaacgaatttctaaatgattgaatgtctaatggaccatgaatacatt-accagggtctatgccatctgtgtttggaacgtccactggtgccagaatt |
289 |
Q |
| |
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||||||| |||||||||||||||| || || || ||||| |||||||| ||| |||||||||||||| ||||| |||| ||| |||||||| |||||| |
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| T |
45075451 |
tctaaactaatttctaaatgattgtatatcaaactgaccaaaaatacatttacctgggtctatgccatccgtgttaggaatgtcgactggtgcaagaatt |
45075550 |
T |
|
| Q |
290 |
gtaagtccgtttataattatgttactgaaga-------tataaagtttaatcagaagaatgaaataacacacacatatagaaaataatgctttaaataaa |
382 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||||||||| ||||| ||| ||||||| | | || || ||||| |||| |
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| T |
45075551 |
gtaagtccatttataattatgttactgaagaatgaagatataaagtttagtcagatgaacgaaataatatatactta--gaaaa-----------ataag |
45075637 |
T |
|
| Q |
383 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaaggggaattgaccaaagtgagatttgatatttggattt |
482 |
Q |
| |
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||||| ||||||||| |||| |||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| |
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| T |
45075638 |
gttgaaaaatttgaagatggtgactaatcaaacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattggatatttggattt |
45075737 |
T |
|
| Q |
483 |
gatcagaatacataatctcaatcatgtatggcctagtgattttcattt |
530 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45075738 |
gatcagaatacataatctcaatcatgtatggcctagtgattttcattt |
45075785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 383 - 527
Target Start/End: Original strand, 45068021 - 45068165
Alignment:
| Q |
383 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaaggggaattgaccaaagtgagatttgatatttggattt |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||| |
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| T |
45068021 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaattaggagagttgatcaaagtgagatttgatatttggattt |
45068120 |
T |
|
| Q |
483 |
gatcagaatacataatctcaatcatgtatggcctagtgattttca |
527 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45068121 |
gatcagaatacataatctcaatcatatatggcctagtgattttca |
45068165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 409 - 521
Target Start/End: Original strand, 45078769 - 45078881
Alignment:
| Q |
409 |
atcaaacctgctgtaaattggatggacaaaccaaaaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatg |
508 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45078769 |
atcaaacctgctgtaaattggatgaacaaaccatgttggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatg |
45078868 |
T |
|
| Q |
509 |
tatggcctagtga |
521 |
Q |
| |
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||||| ||||||| |
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| T |
45078869 |
tatggtctagtga |
45078881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 45078464 - 45078536
Alignment:
| Q |
11 |
cagagacaatgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaa |
83 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
45078464 |
cagagacaatgaagttgtcttcaattctaacgtttgtacatgagtctgttaagaaggggaaaaatgggaaaaa |
45078536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 341
Target Start/End: Original strand, 45078620 - 45078721
Alignment:
| Q |
240 |
taccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcagaag |
339 |
Q |
| |
|
|||| |||| ||| ||||||||||||||| ||| |||||||| ||||| |||||||| |||||||||||||||||| ||| || ||| || |||||||| |
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| T |
45078620 |
tacctgggtttattccatctgtgtttggagagtctactggtgcaagaatggtaagtccatttataattatgttactgcagaaatgaagcttgatcagaag |
45078719 |
T |
|
| Q |
340 |
aa |
341 |
Q |
| |
|
|| |
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|
| T |
45078720 |
aa |
45078721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 45075245 - 45075384
Alignment:
| Q |
22 |
tagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtccttgcaattgaacc |
121 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||| |||| | |||||| ||||||||||||| |||| | |||||| ||||||||||||| || |
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|
| T |
45075245 |
tagttgtcttcaattctgacgtttgtacatgaatctggtaagta---aaaaaaatggaaaaacaagaagtggtcggtaatttactccttgcaattgagcc |
45075341 |
T |
|
| Q |
122 |
ttttattcaatatcaatgacataaactccattaagttgaaaaa |
164 |
Q |
| |
|
| || |||| ||| || | ||||| |||||| ||||| |||| |
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| T |
45075342 |
tcttgttcagtatgaaggtcataagttccatttagttggaaaa |
45075384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 238 - 527
Target Start/End: Original strand, 34505293 - 34505584
Alignment:
| Q |
238 |
attaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcaga |
337 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||| |||||||| ||||| ||||| || |||||||||||||||||||||| |||||| || |||| | |
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|
| T |
34505293 |
attacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaagcttgatcaaa |
34505392 |
T |
|
| Q |
338 |
agaatgaaataacacacacatatagaaaa-taatgctttaaataaagttgagaaat-ttgaaaatggcgactcatcaaacctgctgtaaattggatggac |
435 |
Q |
| |
|
||||||||||| | ||| |||||| |||| | | | ||||||||| |||||||||| | | |||||||||||||||| |||||||||| |
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|
| T |
34505393 |
agaatgaaatattgtatgtataaagaaaaataataaagatattgaggttgagaaaaattgaaaatggtgcattatcaaacctgctgtaagttggatggac |
34505492 |
T |
|
| Q |
436 |
aaaccaaaaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttca |
527 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
34505493 |
aaaccaagaaggggaattgatcaaagtgagatttgatatttggatttgatcagaatacaaaatctcaatcatgtatggcctagtgattttca |
34505584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 34505009 - 34505095
Alignment:
| Q |
11 |
cagagacaatgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttag |
97 |
Q |
| |
|
|||||||||||||||||||||| || |||||| ||| | || ||||||||||||| |||||||| |||| |||| | ||||||| |
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|
| T |
34505009 |
cagagacaatgtagttgtcttcgatcctaacgttcgtagatgaatctgttaagaaggcgaaaaatggaaaaatcaagcagtggttag |
34505095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 527
Target Start/End: Original strand, 17587920 - 17588012
Alignment:
| Q |
435 |
caaaccaaaaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttca |
527 |
Q |
| |
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|||||||| | || ||||| | |||||| |||||||||||||| |||| | ||| ||||||||||||||| ||||||||| |||| ||||| |
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| T |
17587920 |
caaaccaagatggagaattaaacaaagtaagatttgatatttgaattttgttagagaacataatctcaatcaagtatggcctggtgagtttca |
17588012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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