View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17492_low_4 (Length: 491)

Name: NF17492_low_4
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17492_low_4
NF17492_low_4
[»] chr3 (50 HSPs)
chr3 (6-476)||(18017340-18017812)
chr3 (17-436)||(19401084-19401506)
chr3 (170-436)||(17951181-17951447)
chr3 (218-468)||(19352718-19352968)
chr3 (196-476)||(19465670-19465951)
chr3 (181-434)||(18109790-18110043)
chr3 (196-476)||(19382211-19382492)
chr3 (196-468)||(19394475-19394748)
chr3 (166-468)||(19456623-19456923)
chr3 (226-468)||(18872310-18872552)
chr3 (212-468)||(17943280-17943536)
chr3 (256-468)||(19335338-19335550)
chr3 (246-468)||(17725989-17726211)
chr3 (246-468)||(19027218-19027440)
chr3 (303-468)||(19426016-19426181)
chr3 (253-468)||(19355041-19355256)
chr3 (245-468)||(18166482-18166705)
chr3 (239-468)||(25464376-25464608)
chr3 (161-466)||(16678535-16678840)
chr3 (212-436)||(18148176-18148400)
chr3 (253-441)||(19376972-19377160)
chr3 (244-438)||(18117312-18117506)
chr3 (212-468)||(19415510-19415766)
chr3 (202-468)||(14894797-14895064)
chr3 (212-438)||(19462536-19462762)
chr3 (21-146)||(18110043-18110168)
chr3 (244-436)||(19438304-19438496)
chr3 (47-163)||(19353002-19353118)
chr3 (212-436)||(18104854-18105078)
chr3 (17-146)||(17951438-17951566)
chr3 (41-118)||(16679007-16679084)
chr3 (21-134)||(19377247-19377360)
chr3 (255-391)||(24493241-24493377)
chr3 (17-95)||(17725805-17725883)
chr3 (17-95)||(19027034-19027112)
chr3 (17-85)||(19458617-19458685)
chr3 (17-126)||(18166792-18166901)
chr3 (49-134)||(19355345-19355430)
chr3 (49-134)||(19426320-19426405)
chr3 (12-131)||(19456931-19457047)
chr3 (68-120)||(14894596-14894648)
chr3 (20-95)||(25464760-25464836)
chr3 (60-95)||(18148524-18148559)
chr3 (62-125)||(18872190-18872253)
chr3 (61-95)||(18105202-18105236)
chr3 (17-83)||(18149102-18149168)
chr3 (62-112)||(19394798-19394848)
chr3 (67-112)||(19466001-19466046)
chr3 (324-397)||(24496750-24496823)
chr3 (20-112)||(19439808-19439900)
[»] chr8 (2 HSPs)
chr8 (163-468)||(8460892-8461197)
chr8 (49-148)||(8461230-8461330)
[»] chr4 (3 HSPs)
chr4 (202-468)||(2708981-2709247)
chr4 (202-468)||(15536859-15537126)
chr4 (17-91)||(2708799-2708873)
[»] chr6 (1 HSPs)
chr6 (212-468)||(13665366-13665622)
[»] scaffold0274 (2 HSPs)
scaffold0274 (246-468)||(21912-22134)
scaffold0274 (246-470)||(2022-2246)
[»] scaffold0648 (1 HSPs)
scaffold0648 (246-468)||(2551-2774)
[»] scaffold0271 (1 HSPs)
scaffold0271 (246-468)||(11827-12049)
[»] scaffold0640 (1 HSPs)
scaffold0640 (246-470)||(6727-6951)
[»] chr2 (1 HSPs)
chr2 (44-126)||(16437518-16437601)


Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 6 - 476
Target Start/End: Complemental strand, 18017812 - 18017340
Alignment:
Q  6 cataggctctgtt-ggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatgga 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18017812 cataggctctgtttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatgga 18017713  T
Q  105 tataagttatgcatagaattactaaataaacaaaaa-tactctttagtctgatccaagaataaaacaaaatactctatatcatgatcaattcaacttaaa 203  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18017712 tataagttatgcatagaattacaaaataaacaaaaaatactctttagtctgatccaagaataaaacaaaatactctatatcatgatcaattcaacttaaa 18017613  T
Q  204 gtaggttcactaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatata 303  Q
    ||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18017612 gtacgttcactaatctttattagcagaagctcaacttctacgaaagctatttaactttaccatcaaagttacataaagtctgttacccactccatatata 18017513  T
Q  304 aaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatg 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  18017512 aaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaagccaactcccatgcctagatacaatg 18017413  T
Q  404 attcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttctgttatggt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18017412 attcttttatagattcatcatcctcattctctgtagatggcattgcagttttaggattttcttctgttatggt 18017340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 19401506 - 19401084
Alignment:
Q  17 ttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgc 116  Q
    ||||||||||||||||| ||||| || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19401506 ttggaaaattatatcaaagatttgcataacaatgcaggatcttccacatgcataatcacctgataaaatatgaagcaaacaaaatggataaaagttatgc 19401407  T
Q  117 atagaattactaaataaacaaaaatactctttagtctgatccaagaataaaacaaaatact---ctatatcatgatcaattcaacttaaagtaggttcac 213  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||    
T  19401406 atagaattacaaaataaacaaaaatactctttagtctgatccaagaataaaacaaaatactgatctatatcatgatcaattcaacttaaattaggttcac 19401307  T
Q  214 taacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaat 313  Q
    ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  19401306 taacctttactagcaaaagctcaacttctatgaaagctatttaactttaccatcaaagttacatagagcctgttacccactccatatatgaaccgaaaat 19401207  T
Q  314 atgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttat 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || || ||||| |||||||||||    
T  19401206 atgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgccaaggtacaacgattcttttat 19401107  T
Q  414 agattcatcatcctcattctctg 436  Q
    |||||| ||||| ||||||||||    
T  19401106 agattcgtcatcttcattctctg 19401084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 170 - 436
Target Start/End: Complemental strand, 17951447 - 17951181
Alignment:
Q  170 aaaatactctatatcatgatcaattcaacttaaagtaggttcactaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaa 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| |||||||||||||| ||||    
T  17951447 aaaatactctatatcgtgatcaattcaacttaaagtaggttcactaaccttttctagcagaagctcaacttctgcaaaagctatttaactttaccttcaa 17951348  T
Q  270 agttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacct 369  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  17951347 agttacatagagcctgttacccactccatatataaaccgaaagtatgcatgcctccattttcgaataagaaacaaagaaccacaaatcccccagaaacct 17951248  T
Q  370 gctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctg 436  Q
     |||||||||| |||||||| || || |||||||||||||||| |||||||||||||||||||||||    
T  17951247 actgcaaatcccactcccataccaaggtacaatgattcttttagagattcatcatcctcattctctg 17951181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 218 - 468
Target Start/End: Complemental strand, 19352968 - 19352718
Alignment:
Q  218 ctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgc 317  Q
    |||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19352968 ctttactagcagaagctcatattctacgaaagctatttaactttaccattaaagttacataaagcctgttacccactccatatataaaccgaaaatatgc 19352869  T
Q  318 atgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagat 417  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||     
T  19352868 atgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatgcctagatacaatgattcttttatggag 19352769  T
Q  418 tcatcatcctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
    |||||| | ||||||||||| |||||| ||||| | |||||||||||||||    
T  19352768 tcatcaccttcattctctgttgatggcgttgcagtcttaggattttcttct 19352718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 196 - 476
Target Start/End: Complemental strand, 19465951 - 19465670
Alignment:
Q  196 aacttaaagtaggtt-cactaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccact 294  Q
    ||||| ||||||||| |||||||||| ||| | || ||||||| |||| |||||| |||||||||||||| ||||||| ||||| ||  ||| ||| | |    
T  19465951 aacttgaagtaggtttcactaaccttaactggtaggagctcaatttctgcgaaagctatttaactttaccgtcaaagtaacatagagcttgtcacctatt 19465852  T
Q  295 ccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatcccta 394  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  19465851 ccatatataaaccgaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccgtcctta 19465752  T
Q  395 gatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttctgttatggt 476  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  19465751 gatacaatgattcttttatcgattcatcatcctcattctctgtagatggcagtgcagttttaggattttcttctgttatggt 19465670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 181 - 434
Target Start/End: Complemental strand, 18110043 - 18109790
Alignment:
Q  181 tatcatgatcaattcaacttaaagtaggttcactaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaa 280  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  | |||| |||| |||||||||||||| |||||||| |    
T  18110043 tatcatgatcaattcaacttaaattaggttcactaacctttactagcagaagctcaacttcagcaaaagctattcaactttaccatcaatgttacataga 18109944  T
Q  281 gtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatcc 380  Q
    | ||||||||||||||||||||||| ||||| ||||||||||||||||| || || | ||||||||||||||||||||||||||||||| ||||||||||    
T  18109943 gcctgttacccactccatatataaaacgaaagtatgcatgcctccatttcctgataacaaacaaagaaccacaaatcccccagaaacctactgcaaatcc 18109844  T
Q  381 aactcccatccctagatacaatgattcttttatagattcatcatcctcattctc 434  Q
     |||||||| || || ||||||||||||||||||||||||||||||||||||||    
T  18109843 cactcccataccaaggtacaatgattcttttatagattcatcatcctcattctc 18109790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 196 - 476
Target Start/End: Complemental strand, 19382492 - 19382211
Alignment:
Q  196 aacttaaagtaggtt-cactaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccact 294  Q
    ||||| ||||||||| |||||||||| ||| |||| ||||||| |||| |||||| |||||||||||||| ||||| | ||||| ||  ||| ||| |||    
T  19382492 aacttgaagtaggtttcactaaccttaactggcagcagctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctact 19382393  T
Q  295 ccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatcccta 394  Q
    ||||| ||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||| || |||||||||||||||| ||||    
T  19382392 ccatagataaaccgaaagtatgcatgcctccatttcctaataagaaataaagaaccacaaatcccccaaaaacctactccaaatccaactcccatgccta 19382293  T
Q  395 gatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttctgttatggt 476  Q
    ||||||| || ||| |||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  19382292 gatacaacgactctattatagattcatcatcttcattctctgtagatggcagtgcagttttaggattttcttctgttatggt 19382211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 196 - 468
Target Start/End: Complemental strand, 19394748 - 19394475
Alignment:
Q  196 aacttaaagtaggtt-cactaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccact 294  Q
    ||||| ||||||||| |||||||||| | | |||| | ||||| |||| |||||| |||||||||||||| ||||| | ||||| ||  ||| ||| |||    
T  19394748 aacttgaagtaggtttcactaaccttaattggcaggacctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctact 19394649  T
Q  295 ccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatcccta 394  Q
    |||||||||| ||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19394648 ccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatcccta 19394549  T
Q  395 gatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
    |||||||||||||||||||||| || ||||| |||||||||||||||||| ||||| |||||||||||||||||    
T  19394548 gatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagttttaggattttcttct 19394475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 166 - 468
Target Start/End: Complemental strand, 19456923 - 19456623
Alignment:
Q  166 aaacaaaatactctatatcatgatcaattcaacttaaagtaggttcactaacctttactagcagaagctcaacttctacgaaagttatttaactttacca 265  Q
    |||||||||||||||||   ||||||||| |||| |||| || |||||||||||||||| |||| || |||| |||| |||||| |||||||||||||||    
T  19456923 aaacaaaatactctatagtttgatcaattaaactgaaagcagtttcactaacctttact-gcaggagttcaatttctgcgaaagctatttaactttacca 19456825  T
Q  266 tcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaa 365  Q
    ||||||||||||| |  |||||||||||||||||||||| || ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  19456824 tcaaagttacatagaccctgttacccactccatatataacccaaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaa 19456725  T
Q  366 acctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattttct 465  Q
    |||| ||||||||||||||||||  || ||| ||| ||||||| ||||||| |||||||| ||| ||||||| |||||  ||||| | ||||||||||||    
T  19456724 acctactgcaaatccaactcccaagccgagaaacattgattctcttatagagtcatcatcttcaatctctgtggatgg-gttgcagtcttaggattttct 19456626  T
Q  466 tct 468  Q
    |||    
T  19456625 tct 19456623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 226 - 468
Target Start/End: Original strand, 18872310 - 18872552
Alignment:
Q  226 gcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctcc 325  Q
    |||| |||||||  ||| |||||| |||||||||||| ||||||||| ||||| ||  ||| ||| |||||||||||||||| ||| |||||||||||||    
T  18872310 gcaggagctcaatatctgcgaaagctatttaactttatcatcaaagtaacatagagcttgtcacctactccatatataaaccaaaagtatgcatgcctcc 18872409  T
Q  326 attttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatc 425  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| ||||||| |||||||  ||| |||    
T  18872410 atttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgccaagatacattgattctcttatagaagcataatc 18872509  T
Q  426 ctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
     ||||||| |||||||||| ||||| |||||||||||||||||    
T  18872510 ttcattctttgtagatggctttgcagttttaggattttcttct 18872552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 212 - 468
Target Start/End: Complemental strand, 17943536 - 17943280
Alignment:
Q  212 actaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaa 311  Q
    ||||||||| |||| ||| ||||||  |||| |||||| ||||||||||||| |||||||| ||||| ||| |||  ||||||| ||  |||||||||||    
T  17943536 actaaccttaactaacagcagctcagtttctgcgaaagctatttaactttacgatcaaagtaacatagagtttgtcgcccactctatcaataaaccgaaa 17943437  T
Q  312 atatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattctttt 411  Q
      |||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| ||||| || || |||| ||||||||||    
T  17943436 gcatgcatgcctccattttctaataaaaaacaaagaaccacaaatcccccaaaaacctgctgcaaatccaacccccatgccaaggtacagtgattctttt 17943337  T
Q  412 atagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
    ||||| |||||||| ||||||||||| || ||| ||||| |||||||||||||||||    
T  17943336 atagagtcatcatcttcattctctgtggacggctttgcagttttaggattttcttct 17943280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 256 - 468
Target Start/End: Complemental strand, 19335550 - 19335338
Alignment:
Q  256 aactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaa 355  Q
    |||||||| |||||||| ||||| |   ||| |||||||| ||| | ||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  19335550 aactttacgatcaaagtaacatagatcttgtcacccactctataaacaaaccgaaagtaagcatgcctccattttctaataagaaacaaagaaccacaaa 19335451  T
Q  356 tcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcaatttt 455  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| || ||||| ||||| ||||| |||||||||||| ||||    
T  19335450 tcccccagaaacctgctgcaaatccaactctcatccctagatacaatgattctcttaaagagtcgtcatcttcattatctgttgatggcattgcagtttt 19335351  T
Q  456 aggattttcttct 468  Q
    |||||||||||||    
T  19335350 aggattttcttct 19335338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 246 - 468
Target Start/End: Original strand, 17725989 - 17726211
Alignment:
Q  246 aaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaa 345  Q
    |||| ||||||||||||| || ||||| ||||| ||  ||| ||| |||||||  ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  17725989 aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa 17726088  T
Q  346 gaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggca 445  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||   |     
T  17726089 gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttcattctttgtagacaact 17726188  T
Q  446 ttgcaattttaggattttcttct 468  Q
    ||| | |||||||||||||||||    
T  17726189 ttgaatttttaggattttcttct 17726211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 246 - 468
Target Start/End: Original strand, 19027218 - 19027440
Alignment:
Q  246 aaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaa 345  Q
    |||| ||||||||||||| || ||||| ||||| ||  ||| ||| |||||||  ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  19027218 aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa 19027317  T
Q  346 gaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggca 445  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||   |     
T  19027318 gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttcattctttgtagacaact 19027417  T
Q  446 ttgcaattttaggattttcttct 468  Q
    ||| | |||||||||||||||||    
T  19027418 ttgaatttttaggattttcttct 19027440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 303 - 468
Target Start/End: Complemental strand, 19426181 - 19426016
Alignment:
Q  303 aaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaat 402  Q
    ||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19426181 aaaccgaaagtatgcatgcttccattttctaataaggaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaat 19426082  T
Q  403 gattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
    |||||||| ||||| |||||||| ||||||| |||||||||  ||||| |||||||||||||||||    
T  19426081 gattctttgatagagtcatcatcttcattctttgtagatggtgttgcagttttaggattttcttct 19426016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 253 - 468
Target Start/End: Complemental strand, 19355256 - 19355041
Alignment:
Q  253 tttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccac 352  Q
    ||||||||||| |||||||| ||||| |   ||| || ||||| ||  | ||||||||| ||||||||||||||||||||||| |||||||||||||  |    
T  19355256 tttaactttacgatcaaagtaacatagatcttgtcacgcactctatcaacaaaccgaaagtatgcatgcctccattttctaattagaaacaaagaacggc 19355157  T
Q  353 aaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcaat 452  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| | |||||||||||||||| |    
T  19355156 aaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctttgatagagtcgtcatcttcattttttgtagatggcattgcagt 19355057  T
Q  453 tttaggattttcttct 468  Q
    ||||||||||||||||    
T  19355056 tttaggattttcttct 19355041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 245 - 468
Target Start/End: Complemental strand, 18166705 - 18166482
Alignment:
Q  245 gaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaa 344  Q
    ||||| |||||||||||||  ||||||| ||||| ||  ||| ||| |||| ||  ||||||||||| |||||||| |||||||||||||| ||||||||    
T  18166705 gaaagctatttaactttacgttcaaagtaacatagagcttgtcaccaactctatcaataaaccgaaagtatgcatgtctccattttctaataagaaacaa 18166606  T
Q  345 agaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggc 444  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||  ||||| ||||||| |||||||| ||||||| |||||| |||    
T  18166605 agaaccacaaatcccccagaaacctactgcaaatccaactcccatgcctaggtacaaccattctcttatagagtcatcatcttcattctttgtagacggc 18166506  T
Q  445 attgcaattttaggattttcttct 468  Q
     ||||| |||||| ||||| ||||    
T  18166505 gttgcagttttagaatttttttct 18166482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 239 - 468
Target Start/End: Complemental strand, 25464608 - 25464376
Alignment:
Q  239 ttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgag 338  Q
    |||| |||||||  ||||||||||| |||||||| ||||| ||| ||| || ||||||||  ||||||||||| ||||||||||||||||| ||||| |     
T  25464608 ttctgcgaaagtggtttaactttacgatcaaagtaacatagagtttgtcactcactccattaataaaccgaaagtatgcatgcctccatttcctaataaa 25464509  T
Q  339 aaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatc---atcctcattctct 435  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||| |||||   ||| ||| ||| |    
T  25464508 aaacaaagaaccacaaatcccccagaaacctattgcaaatccaactcccaagcctagatacaatgattcttttatagagtcatcgttatcttcactcttt 25464409  T
Q  436 gtagatggcattgcaattttaggattttcttct 468  Q
    | ||| ||  ||||| |||||||||||||||||    
T  25464408 gcagacggtgttgcatttttaggattttcttct 25464376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 161 - 466
Target Start/End: Complemental strand, 16678840 - 16678535
Alignment:
Q  161 gaataaaacaaaatactctatatcatgatcaattcaacttaaagtaggttcactaacctttactagcagaagctcaacttctacgaaagttatttaactt 260  Q
    ||||| |||||| |||||||||   |||| |||  |||||||| ||||| |||||||||| ||||  || | ||||||||||  ||||||||||||||||    
T  16678840 gaatacaacaaattactctatagtttgattaataaaacttaaaataggtccactaaccttcactattaggaactcaacttctgtgaaagttatttaactt 16678741  T
Q  261 taccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccc 360  Q
    |||||||||||||||||| ||  |||  ||||||||||  |||||  || | ||||  ||||||||||| ||||| |||||||||||||||||||| |||    
T  16678740 taccatcaaagttacatacagcttgtcgcccactccatcaataaattgatagtatgtgtgcctccatttcctaataagaaacaaagaaccacaaataccc 16678641  T
Q  361 cagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggat 460  Q
    ||||||||| | ||||| ||||||||||  || ||||||||||||||||||| ||  |||| ||| ||| | |||||||||||  |||   |||||||||    
T  16678640 cagaaacctaccgcaaaaccaactcccaagcccagatacaatgattcttttagagtatcattatcttcactttctgtagatggtgttgtgtttttaggat 16678541  T
Q  461 tttctt 466  Q
    ||||||    
T  16678540 tttctt 16678535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 212 - 436
Target Start/End: Complemental strand, 18148400 - 18148176
Alignment:
Q  212 actaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaa 311  Q
    ||||||||| |||||||| |||||| ||||  |||||| ||||||||||||| |||| ||| ||||| ||   || |||||||| ||  |  ||||||||    
T  18148400 actaaccttaactagcaggagctcagcttcggcgaaagctatttaactttacgatcacagtaacatagagatagtcacccactctatcaactaaccgaaa 18148301  T
Q  312 atatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattctttt 411  Q
     || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| || ||| ||    
T  18148300 gtacgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctctt 18148201  T
Q  412 atagattcatcatcctcattctctg 436  Q
    |||||||||||||| ||||||||||    
T  18148200 atagattcatcatcttcattctctg 18148176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 253 - 441
Target Start/End: Complemental strand, 19377160 - 19376972
Alignment:
Q  253 tttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccac 352  Q
    ||||||||||| |||||||| ||||| ||| ||| ||| |||| ||  |||||| |||| ||||||||||||||||| ||||| |||||||||||||| |    
T  19377160 tttaactttacgatcaaagtaacatagagtttgtcacctactctattaataaactgaaagtatgcatgcctccatttcctaataagaaacaaagaaccgc 19377061  T
Q  353 aaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagat 441  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||  ||||||||||  |||||||    
T  19377060 aaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctcttatggattcactatcctcattccttgtagat 19376972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 244 - 438
Target Start/End: Complemental strand, 18117506 - 18117312
Alignment:
Q  244 cgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaaca 343  Q
    |||||| ||||||||||||| |||||||| ||||| ||   || |||||||| ||  |  |||||||| || |||||||||||||| ||||| |||||||    
T  18117506 cgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcctaataagaaaca 18117407  T
Q  344 aagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgta 438  Q
     ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||    
T  18117406 tagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctagatacaatgactctcttatagattcatcatcttcattctctgta 18117312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 212 - 468
Target Start/End: Complemental strand, 19415766 - 19415510
Alignment:
Q  212 actaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaa 311  Q
    ||||||||| |||| | | ||||||  |||| |||||| ||||||||||||| | |||||| ||||| ||  ||    |||||| ||  |||||||| ||    
T  19415766 actaaccttaactaactgcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaa 19415667  T
Q  312 atatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattctttt 411  Q
     ||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||     
T  19415666 gtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatacaatgaatctttc 19415567  T
Q  412 atagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
    ||||| |||| ||| ||||||| ||| |||||| ||||| || ||||||||||||||    
T  19415566 atagaatcataatcttcattctttgttgatggcgttgcagttgtaggattttcttct 19415510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 202 - 468
Target Start/End: Original strand, 14894797 - 14895064
Alignment:
Q  202 aagtaggtt-cactaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatat 300  Q
    ||||||||| |||||||||| |||||| | ||||||| || | | |||||| |||||||||   |||||||| ||||| ||  ||| ||| |||||||      
T  14894797 aagtaggttacactaaccttaactagccggagctcaattttttccaaagttgtttaactttgggatcaaagtaacatagagcttgtcacctactccatca 14894896  T
Q  301 ataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagataca 400  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||| |||||| || |||||||    
T  14894897 ataaaccgaaagtatgcatgcctccattttctaataagaaacaaagaaccagaaatcccccaaaaacctactgcaaatccaattcccatgccaagataca 14894996  T
Q  401 atgattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
     ||||||| ||||||| || || || ||| ||| |||| | ||| || || | |||||||||||||||    
T  14894997 ttgattctcttatagagtcctcgtcttcaatctgtgtaaaaggcttttcagtgttaggattttcttct 14895064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 212 - 438
Target Start/End: Complemental strand, 19462762 - 19462536
Alignment:
Q  212 actaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaa 311  Q
    ||||||||| |||||||| ||||||  |||| |||||| |||||||||||||  ||||||| ||||| ||   || |||||||| ||  |  ||||||||    
T  19462762 actaaccttaactagcaggagctcagtttctgcgaaagctatttaactttacggtcaaagtaacatagagaaagtcacccactctatcaactaaccgaaa 19462663  T
Q  312 atatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattctttt 411  Q
     || |||||||||||||| | ||| |||||||||||||||||||| |||||||||||| |||||||||| |||||||| |||| |||||| || ||| ||    
T  19462662 gtacgcatgcctccatttccgaataagaaacaaagaaccacaaatgccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctctt 19462563  T
Q  412 atagattcatcatcctcattctctgta 438  Q
    |||||||||||||| ||||||||||||    
T  19462562 atagattcatcatcttcattctctgta 19462536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 18110168 - 18110043
Alignment:
Q  21 aaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgcatag 120  Q
    ||||||||||||||||||| || | ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  18110168 aaaattatatcaacgatttgcatagcagtgtaggatcttccacatacataatcacttgacaaaatatgaagcaaacaaattggatataagttatgcatag 18110069  T
Q  121 aattactaaataaacaaaaatactct 146  Q
    |||||| ||||||| |||||||||||    
T  18110068 aattacaaaataaagaaaaatactct 18110043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 244 - 436
Target Start/End: Complemental strand, 19438496 - 19438304
Alignment:
Q  244 cgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaaca 343  Q
    |||||| ||||||||||||| |||||||| ||||||||   || || ||||  ||  |  |||||||| || |||||||||||||| ||||| |||||||    
T  19438496 cgaaagctatttaactttactatcaaagtaacataaagatagtcacacactgtatcaactaaccgaaagtacgcatgcctccatttcctaataagaaaca 19438397  T
Q  344 aagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctg 436  Q
     |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| || ||| |||||||||||||||| ||||||||||    
T  19438396 tagaaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaacgactctcttatagattcatcatcttcattctctg 19438304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 19353118 - 19353002
Alignment:
Q  47 agtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgcatagaattactaaataaacaaaaatactct 146  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||  |||||||||     
T  19353118 agtgcatgatcttccacatacataatcacctgataaaatatgaagcaaacaaaatgtatataagttatgcatagaattacaaaattaagcaaaatactcc 19353019  T
Q  147 ttagtctgatccaagaa 163  Q
    ||||||||||| |||||    
T  19353018 ttagtctgatcaaagaa 19353002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 212 - 436
Target Start/End: Complemental strand, 18105078 - 18104854
Alignment:
Q  212 actaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaa 311  Q
    ||||||||| |||||||| ||||||  |||  |||||| ||||||||||||| |||||||| ||||| ||   || |||||||| ||  |  ||||||||    
T  18105078 actaaccttaactagcaggagctcagtttcggcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctattaactaaccgaaa 18104979  T
Q  312 atatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattctttt 411  Q
     ||||||||||||||||| ||||| ||||||| ||||||  |||||||| |||| ||| |||||||||| |||||||| |||| |||||| || ||| ||    
T  18104978 gtatgcatgcctccatttcctaataagaaacatagaaccgaaaatccccaagaatcctactgcaaatcccactcccatgcctaaatacaacgactctctt 18104879  T
Q  412 atagattcatcatcctcattctctg 436  Q
    |||||||||||||  ||||||||||    
T  18104878 atagattcatcattttcattctctg 18104854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 17951566 - 17951438
Alignment:
Q  17 ttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgc 116  Q
    |||| |||||||||||||||||| || | ||||  |||||||||||||||||||||||||||| ||||||| |||||| |||| ||| ||||||||||||    
T  17951566 ttggtaaattatatcaacgatttccatagcagtataggatcttccacatacataatcacctgacaaaatatcaagcaagcaaattgg-tataagttatgc 17951468  T
Q  117 atagaattactaaataaacaaaaatactct 146  Q
    |||||||||  ||||||| |||||||||||    
T  17951467 atagaattataaaataaagaaaaatactct 17951438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 16679084 - 16679007
Alignment:
Q  41 caaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgcat 118  Q
    ||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||  |||||||||||||||||||||    
T  16679084 caaaacaatgcaagatcttccacatgcataatcacctgagaaaatatgaagcaaatgaaatggatataagttatgcat 16679007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 19377360 - 19377247
Alignment:
Q  21 aaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgcatag 120  Q
    ||||| ||||| |||||||||| || | ||||| |||||||||||  ||||||||||||||||   |||||||||  |||||||| |||||| |||||||    
T  19377360 aaaatgatatccacgattttcacaaaaatgcagaatcttccacattaataatcacctgataaagattgaagcaaatgaaatggatttaagttttgcatag 19377261  T
Q  121 aattactaaataaa 134  Q
     ||||| |||||||    
T  19377260 tattacaaaataaa 19377247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 391
Target Start/End: Original strand, 24493241 - 24493377
Alignment:
Q  255 taactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaa 354  Q
    |||||| ||||||||||||||||| |  |||| |||||||||||  ||||||||  | || || ||||||||||| ||||| ||||| |||| ||||||     
T  24493241 taacttcaccatcaaagttacatagatcctgtcacccactccatcgataaaccggtagtacgcgtgcctccatttcctaataagaaataaaggaccacac 24493340  T
Q  355 atcccccagaaacctgctgcaaatccaactcccatcc 391  Q
    |||  ||| |||||| || |||| |||||||||||||    
T  24493341 atcaaccaaaaacctactccaaacccaactcccatcc 24493377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 17725805 - 17725883
Alignment:
Q  17 ttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaa 95  Q
    ||||||||||||||| |||||||  | ||||||||||| ||| ||||| | ||||||||||||||||||||||| ||||    
T  17725805 ttggaaaattatatccacgatttgaataacagtgcaggttctgccacaaatataatcacctgataaaatatgaaacaaa 17725883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 19027034 - 19027112
Alignment:
Q  17 ttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaa 95  Q
    ||||||||||||||| |||||||  | ||||||||||| ||| ||||| | ||||||||||||||||||||||| ||||    
T  19027034 ttggaaaattatatccacgatttgaataacagtgcaggttctgccacaaatataatcacctgataaaatatgaaacaaa 19027112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 19458685 - 19458617
Alignment:
Q  17 ttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaat 85  Q
    ||||||||||||||| | ||||| || ||||| ||||||||||||||| | ||||||||||||||||||    
T  19458685 ttggaaaattatatccatgatttgcataacagcgcaggatcttccacaaatataatcacctgataaaat 19458617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 18166901 - 18166792
Alignment:
Q  17 ttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgc 116  Q
    |||||||||||||||| | || |  | |||| |||||||| | |||||| || ||| ||||||||||||||||| ||||  |||||||| |||||| ||     
T  18166901 ttggaaaattatatcaccaatctggataacattgcaggatttgccacatgcagaataacctgataaaatatgaaacaaatgaaatggatgtaagttttga 18166802  T
Q  117 atagaattac 126  Q
    ||||||||||    
T  18166801 atagaattac 18166792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 19355430 - 19355345
Alignment:
Q  49 tgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgcatagaattactaaataaa 134  Q
    ||||| ||||| |||||  ||||||||||||||||   ||||||| |  ||||||||||||||| ||||||||||||| |||||||    
T  19355430 tgcagaatctttcacattaataatcacctgataaagattgaagcatatgaaatggatataagttttgcatagaattacaaaataaa 19355345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 19426405 - 19426320
Alignment:
Q  49 tgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgcatagaattactaaataaa 134  Q
    ||||| |||||||||||  ||||||||||||||||   |||| ||||  ||||||||||| ||| ||||||||||||| |||||||    
T  19426405 tgcagaatcttccacattaataatcacctgataaagattgaatcaaatgaaatggatataggttttgcatagaattacaaaataaa 19426320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 19457047 - 19456931
Alignment:
Q  12 ctctgttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagt 111  Q
    |||||| ||||| ||||||| | ||||| |||| |  |||| ||||||||| || | |||||| |||||||||||| ||   | ||| ||||||||||||    
T  19457047 ctctgtcggaaagttatatccatgatttgcaaagctatgcaagatcttccatatgcttaatcatctgataaaatattaa---atcaagatggatataagt 19456951  T
Q  112 tatgcatagaattactaaat 131  Q
    |||||||||||||| |||||    
T  19456950 tatgcatagaattattaaat 19456931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 14894596 - 14894648
Alignment:
Q  68 ataatcacctgataaaatatgaagcaaacaaaatggatataagttatgcatag 120  Q
    |||||||||| |||||||||||||||||| |||| ||||||||| ||| ||||    
T  14894596 ataatcacctaataaaatatgaagcaaactaaatagatataagtcatgaatag 14894648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 25464836 - 25464760
Alignment:
Q  20 gaaaattatatcaacgattttcaaaacagt-gcaggatcttccacatacataatcacctgataaaatatgaagcaaa 95  Q
    |||||||||||| || |||| || |||| | ||||||||| ||| || |||||| ||||||||||||||||||||||    
T  25464836 gaaaattatatccaccatttgcataacatttgcaggatctgccatatgcataatgacctgataaaatatgaagcaaa 25464760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 18148559 - 18148524
Alignment:
Q  60 ccacatacataatcacctgataaaatatgaagcaaa 95  Q
    |||||| |||||||||||||||||||||||||||||    
T  18148559 ccacatgcataatcacctgataaaatatgaagcaaa 18148524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 18872190 - 18872253
Alignment:
Q  62 acatacataatcacctgataaaatatgaagcaaacaaaatggatataagttatgcatagaatta 125  Q
    |||| |||||||||||||||||||||||| ||||  |||||||| |||||| ||  ||||||||    
T  18872190 acatgcataatcacctgataaaatatgaaacaaatgaaatggatgtaagttttgattagaatta 18872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 18105236 - 18105202
Alignment:
Q  61 cacatacataatcacctgataaaatatgaagcaaa 95  Q
    ||||| |||||||||||||||||||||||||||||    
T  18105236 cacatgcataatcacctgataaaatatgaagcaaa 18105202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 18149168 - 18149102
Alignment:
Q  17 ttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaa 83  Q
    ||||||||||||||| ||||||| ||||| | ||||| |||||  ||||  ||||||||||||||||    
T  18149168 ttggaaaattatatccacgatttgcaaaaaaatgcagaatcttgtacattaataatcacctgataaa 18149102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 19394848 - 19394798
Alignment:
Q  62 acatacataatcacctgataaaatatgaagcaaacaaaatggatataagtt 112  Q
    |||| |||||||||||||||||||||||| ||||  |||||||| ||||||    
T  19394848 acatgcataatcacctgataaaatatgaaacaaatgaaatggatgtaagtt 19394798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 19466046 - 19466001
Alignment:
Q  67 cataatcacctgataaaatatgaagcaaacaaaatggatataagtt 112  Q
    |||||||||||||||||||||||| ||||  |||||||| ||||||    
T  19466046 cataatcacctgataaaatatgaaacaaatgaaatggatgtaagtt 19466001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 24496750 - 24496823
Alignment:
Q  324 ccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagat 397  Q
    |||||| |||||  ||||||||| |||||| |||  ||||||||||  | |||||||||||||||| |||||||    
T  24496750 ccatttcctaatacgaaacaaaggaccacagatcaaccagaaacctattccaaatccaactcccatgcctagat 24496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 19439900 - 19439808
Alignment:
Q  20 gaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaagcaaacaaaatggatataagtt 112  Q
    |||||||||||| |||||||  | |||| ||| ||||||  ||||  ||||||| ||| |||||||||||| ||||  |||||||| ||||||    
T  19439900 gaaaattatatccacgatttcgataacaatgccggatctggcacaagcataatcccctaataaaatatgaaacaaatgaaatggatgtaagtt 19439808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 163 - 468
Target Start/End: Complemental strand, 8461197 - 8460892
Alignment:
Q  163 ataaaacaaaatactctatatcatgatcaattcaacttaaagtaggttcactaacctttactagcagaagctcaacttctacgaaagttatttaacttta 262  Q
    ||||||||||||| |||||    || |||||  |||||||||||||||||||||||||| ||||||| ||||||| |||| |||||  || |||||||||    
T  8461197 ataaaacaaaatattctatggtgtgttcaataaaacttaaagtaggttcactaacctttgctagcaggagctcaatttctgcgaaatctaattaacttta 8461098  T
Q  263 ccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatccccca 362  Q
    |||||||| || |||| ||  ||| ||||| |||||  ||||| ||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  8461097 ccatcaaaattccatagagcttgtcacccattccatcaataaatcgatagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatccccca 8460998  T
Q  363 gaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattt 462  Q
     |||||  ||||||||||||||||||| || ||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||| |||||||||||    
T  8460997 aaaacccactgcaaatccaactcccatgccaagatacaatgattctcttatagagtcatcatcttcattctctgtagacggcattgcagttttaggattt 8460898  T
Q  463 tcttct 468  Q
    ||||||    
T  8460897 tcttct 8460892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 8461330 - 8461230
Alignment:
Q  49 tgcaggatcttccacatacataatc-acctgataaaatatgaagcaaacaaaatggatataagttatgcatagaattactaaataaacaaaaatactctt 147  Q
    |||||||||| |||||| ||||||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||| |||| ||  |||||||||||    
T  8461330 tgcaggatctgccacatgcataatccacctgataaaatacgaagcaaacaaaatagacataagttatgcatagaattacaaaatcaagcaaaatactctt 8461231  T
Q  148 t 148  Q
    |    
T  8461230 t 8461230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 202 - 468
Target Start/End: Original strand, 2708981 - 2709247
Alignment:
Q  202 aagtaggttcactaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatata 301  Q
    ||||||||||||||||||| ||| | |||||||| | ||||| ||||||| |||||||||| ||||||||||||||| ||  ||| ||| |||||||  |    
T  2708981 aagtaggttcactaaccttaacttgtagaagctcgatttctatgaaagttgtttaactttatcatcaaagttacatagagcttgtcacctactccatcaa 2709080  T
Q  302 taaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaa 401  Q
    |||||||| | ||||  | ||||||||| ||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  2709081 taaaccgatagtatgtgttcctccatttcctaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaa 2709180  T
Q  402 tgattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
    ||||||| |||||||||| || || || ||  || |||||||||||||  ||||| |||||||||||    
T  2709181 tgattctcttatagattcgtcgtcttcttttcctctagatggcattgcctttttatgattttcttct 2709247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 202 - 468
Target Start/End: Complemental strand, 15537126 - 15536859
Alignment:
Q  202 aagtaggttc-actaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatat 300  Q
    |||||||||| ||| ||||| |||||||| ||||||| ||||  ||||  | ||||||||||| |||||||| ||||| |   ||| ||| |||  ||      
T  15537126 aagtaggttccactgaccttaactagcaggagctcaatttctgtgaaacatgtttaactttacgatcaaagtaacatagatcttgtcacctactttatca 15537027  T
Q  301 ataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagataca 400  Q
     |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  15537026 gtaaaccgaaagtatgcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctaccgcaaatccaactcccatccctagataca 15536927  T
Q  401 atgattcttttatagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
    ||||||||||  |||| |||||||| ||||||||||| |||||  ||||  |||| ||||||||||||    
T  15536926 atgattctttgttagagtcatcatcttcattctctgtggatggtgttgcggttttgggattttcttct 15536859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 2708799 - 2708873
Alignment:
Q  17 ttggaaaattatatcaacgattttcaaaacagtgcaggatcttccacatacataatcacctgataaaatatgaag 91  Q
    ||||||||||| ||| || |||| || |||| ||||||| || |||||  ||||| |||||||||||||||||||    
T  2708799 ttggaaaattacatccacaatttgcataacaatgcaggaactgccacacgcataaccacctgataaaatatgaag 2708873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 212 - 468
Target Start/End: Original strand, 13665366 - 13665622
Alignment:
Q  212 actaacctttactagcagaagctcaacttctacgaaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaa 311  Q
    ||||||||| |||| ||| ||||||  | || |||||| |||||||||||||||||||||| | ||| ||  |||  ||||||| ||  | |||||||||    
T  13665366 actaaccttaactaacagcagctcagttcctgcgaaagctatttaactttaccatcaaagtaatatagagattgtcgcccactctatcaaaaaaccgaaa 13665465  T
Q  312 atatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattctttt 411  Q
      |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || || | |||||||||||||    
T  13665466 gcatgcatgcctccattttctaataagaaacaaagaaccacatatcccccagaaacctgctgcaaatccaacccccatgccaaggttcaatgattctttt 13665565  T
Q  412 atagattcatcatcctcattctctgtagatggcattgcaattttaggattttcttct 468  Q
    ||||| || ||||| ||||||| |||||||||  ||||| || ||||||||||||||    
T  13665566 atagagtcgtcatcttcattctttgtagatggtgttgcagttctaggattttcttct 13665622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 246 - 468
Target Start/End: Complemental strand, 22134 - 21912
Alignment:
Q  246 aaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaa 345  Q
    |||||| ||||||||||| ||| |||| ||||| ||  ||| |||||||| ||  ||||||||| | |||||||||||||||||| ||||||||||||||    
T  22134 aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa 22035  T
Q  346 gaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggca 445  Q
    |||||| ||||||||||||||||  ||||||||||||| ||||| || ||||||||||| ||||||  ||| |||||||| |||||||||||| |||||     
T  22034 gaaccaaaaatcccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggct 21935  T
Q  446 ttgcaattttaggattttcttct 468  Q
    ||||| |||||||||||||||||    
T  21934 ttgcagttttaggattttcttct 21912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 246 - 470
Target Start/End: Original strand, 2022 - 2246
Alignment:
Q  246 aaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaa 345  Q
    |||||| ||||||||||| ||| |||| ||||| ||  ||| |||||||| ||  ||||||||| | |||||||||||||||||| ||||||||||||||    
T  2022 aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa 2121  T
Q  346 gaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggca 445  Q
    |||||  ||||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||||||  ||| |||||||| |||||||||||| |||||     
T  2122 gaaccgaaaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggct 2221  T
Q  446 ttgcaattttaggattttcttctgt 470  Q
    ||||| || ||||||||||||||||    
T  2222 ttgcagttataggattttcttctgt 2246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 246 - 468
Target Start/End: Original strand, 2551 - 2774
Alignment:
Q  246 aaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaa 345  Q
    |||||| ||||||||||| ||| |||| ||||| ||  ||| |||||||| ||  ||||||||| | |||||||||||||||||| ||||||||||||||    
T  2551 aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa 2650  T
Q  346 gaaccacaaat-cccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggc 444  Q
    |||||| |||| ||||||||||||  ||||||||||||| ||||| || ||||||||||| ||||||  ||| |||||||| |||||||||||| |||||    
T  2651 gaaccaaaaatacccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggc 2750  T
Q  445 attgcaattttaggattttcttct 468  Q
     ||||| |||||||||||||||||    
T  2751 tttgcagttttaggattttcttct 2774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 246 - 468
Target Start/End: Complemental strand, 12049 - 11827
Alignment:
Q  246 aaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaa 345  Q
    |||||| ||||||||||| ||| |||| ||||| ||  ||| |||||||| ||  ||||||||| | |||||||||||||||||| ||||||||||||||    
T  12049 aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa 11950  T
Q  346 gaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggca 445  Q
    |||||  ||||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||||||  ||| |||||||| |||||||||||| |||||     
T  11949 gaaccgaaaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggct 11850  T
Q  446 ttgcaattttaggattttcttct 468  Q
    ||||| |||||||||||||||||    
T  11849 ttgcagttttaggattttcttct 11827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 246 - 470
Target Start/End: Complemental strand, 6951 - 6727
Alignment:
Q  246 aaagttatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaa 345  Q
    |||||| ||||||||||| ||| |||| ||||| ||  ||| |||||||| ||  ||||||||| | |||||||||||||||||| ||||||||||||||    
T  6951 aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa 6852  T
Q  346 gaaccacaaatcccccagaaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagattcatcatcctcattctctgtagatggca 445  Q
    |||||  ||||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||||||  ||| |||||||| |||||||||||| |||||     
T  6851 gaaccgaaaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggct 6752  T
Q  446 ttgcaattttaggattttcttctgt 470  Q
    ||||| || ||||||||||||||||    
T  6751 ttgcagttataggattttcttctgt 6727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 16437601 - 16437518
Alignment:
Q  44 aacagtgcaggatcttccacatacataatcacctgataaaa-tatgaagcaaacaaaatggatataagttatgcatagaattac 126  Q
    |||| |||||||||| |||||| ||||||||||||| |||| ||||||| |||   |||||||||||||| |||||||||||||    
T  16437601 aacaatgcaggatctcccacatgcataatcacctgaaaaaaatatgaagaaaattcaatggatataagttttgcatagaattac 16437518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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