View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17492_low_5 (Length: 471)
Name: NF17492_low_5
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 36031826 - 36031361
Alignment:
| Q |
1 |
ctgggtcctcttagaactcgcactaggttttccaattccatgtaccccaattttctattatctctcccaaagaaattactttgtagccggc-tctcacta |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
36031826 |
ctgggtcctcttacaactcgcactaggttttccaattccatttaccccatttttttattatctctcccaaagaaattactttgtagccggcttctcccta |
36031727 |
T |
|
| Q |
100 |
aatttcaaatatagtcggctgtcatgggtttgtgcttcaaggaaaagaagtaaaagcacaacaaaaattatcgagataatatgttgctttagaatttctc |
199 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |||| |||| | ||||||| | || ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
36031726 |
aatttaaaatatagtccgctgtcatgggtttgtgctttaagggaaaggaataaaagccccacccaaattatcgagataatatgttgctttaaaatttttt |
36031627 |
T |
|
| Q |
200 |
tttc-----nnnnnnnnnnntgttgatttagaattttgatccattgagatatttaaccnnnnnnncaacaactaatccatttaactattgattcaatctc |
294 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36031626 |
tttcaaaaaaaaaaaaaaaatgttgatttagaattttgatccattgagatatttaaccaaaaaaacaataactaatccatttaactattgattcaatctc |
36031527 |
T |
|
| Q |
295 |
cagttctgctaaaacacattgattttgcaattctatagnnnnnnnttgtctaacaggattgctagacttcaagtattatcacta------ctattatgat |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36031526 |
cagttctgctaaaacacattgattttgcaattctatagaaaaaaattgtctaacgggattgctagacttcaagtattatcactactatgtctattatgat |
36031427 |
T |
|
| Q |
389 |
ctatttgcgtatgatgtatccctatttacgttttatttgttttgttcggcatttttagttcaatta |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36031426 |
ctatttgcgtatgatgtatccctatttacgttttatttgttttgttcggcatttttagttcaatta |
36031361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University