View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17492_low_6 (Length: 460)
Name: NF17492_low_6
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 55 - 445
Target Start/End: Original strand, 8825322 - 8825713
Alignment:
| Q |
55 |
atgtcttactaacatgccacttgtgtctatctaagtcctttcatacacctttcatacatgagaaatggagaagatcttaacttctaatcatcagtcaaaa |
154 |
Q |
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| T |
8825322 |
atgtcttactaacatgccacttgtgtctatctaagtcctttcatacacctttcatccatgagaaatggagaagatcttaacttctaatcattagtcaaaa |
8825421 |
T |
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| Q |
155 |
tgtctccacctcgacaccatgtaaatactcttcannnnnnn-gagaaattgagaggattccaacttataatcagccgtcaaaatgtctccgcctcgtcaa |
253 |
Q |
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| T |
8825422 |
tgtctccacctcggcaccatgtaaatactcttcatttctttcgagaaattgagaggattccaacttataatcagccgtcaaaatgtccccgcctcgtcaa |
8825521 |
T |
|
| Q |
254 |
tctccgcgtatctgacccggatgctattcgggtcttaacccgttcaaactcggtaacccgacaaggaatagtgattccaccttgatgacaaaacccatat |
353 |
Q |
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| T |
8825522 |
tctccgcgtatctgacccggatgctattcgggtcttaacccgttcaaactcggtaacccgacaaggaatagtgattccaccttgatgacaaaacccatac |
8825621 |
T |
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| Q |
354 |
tccttctcagcttctttcaacaattccccaaacaaaggatggttgaaataaaccaccggcaccaaaacccgccgaaactcaccgtctttctg |
445 |
Q |
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| T |
8825622 |
tccttctcagcttctttcaacaattccccaaacaaaggatggttgaaataaaccaccggcaccaaaacccgccgaaactcaccgtctttctg |
8825713 |
T |
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