View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17492_low_8 (Length: 417)
Name: NF17492_low_8
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17492_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 8075460 - 8075077
Alignment:
| Q |
17 |
taggtgcctatataaagcattgcaaactaagttaatgtatatcaacacattcacataatcacaagaactcaattgattcaataatcattcatgggttctg |
116 |
Q |
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| T |
8075460 |
taggtgcctatataaagcattgcaaactaagttaatgtatatcaacacattcacataatcacaagaactcaattgattcaataatcattcatgggttctg |
8075361 |
T |
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| Q |
117 |
agaatgagcaaaaagcaagtgaactctttgaagttcaagctcacttgtacaatcagttattgagtttcttgagacccgtgtcgatcaagtgggctgttga |
216 |
Q |
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| T |
8075360 |
agaatgagcacaaagcaagtgaactctttgaagttcaagctcacttgtacaatcagttatttagtttcttgagacccgtgtcgatcaagtgggctgttga |
8075261 |
T |
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| Q |
217 |
acttggcataccagatataatccaaaatcatggcaaacctatcattcttcctgagcttgtctcggctcttcgaattccagaagcaaaagccggttgtgtt |
316 |
Q |
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| T |
8075260 |
acttggcataccagatataattcaaaatcatggcaaacctattactcttcccgagcttgtctcggctcttcgaattccagaagcaaaagccggttgtgtt |
8075161 |
T |
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| Q |
317 |
catagtgtcatgcgtttgttggcgcacaataaaatcttcgcaattgtgaagatagacgacaacaaagaagcatatgctctttct |
400 |
Q |
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| T |
8075160 |
cacagtgtcatgcgtttattggcgcacaataaaatcttcgcaattgtgaagatagacgacaacaaagaagcatatgctctttct |
8075077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 8067029 - 8066642
Alignment:
| Q |
19 |
ggtgcctatataaagcattgcaaactaagttaatgtatatcaacacattcacataatcacaagaactcaattgattcaataat------cattcatgggt |
112 |
Q |
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| T |
8067029 |
ggtgcttatataaagcatagaaaactaaattaatgtatataaacaaattcacataatcacaagaattcatttgattcaataatattaatcattcatggat |
8066930 |
T |
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| Q |
113 |
tctgagaatgagcaaaaagcaagtgaactctttgaagttcaagctcacttgtacaatcagttattgagtttcttgagacccgtgtcgatcaagtgggctg |
212 |
Q |
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|||||||||||| | ||||||||||| ||||||| || |||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||| |
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| T |
8066929 |
tctgagaatgagtacaaagcaagtgagctctttgtagctcaagctcacctgtacaatcagatattcagtttcatgagacccgtgtcgatcaagtgggctg |
8066830 |
T |
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| Q |
213 |
ttgaacttggcataccagatataatccaaaatcatggcaaacctatcattcttcctgagcttgtctcggctcttcgaattccagaagcaaaagccggttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8066829 |
ttgaacttggcataccagatataatccaaaatcatggcaaacctatcactcttcctgagcttgtctcggctcttcgaattccagaagcaaaagccggttg |
8066730 |
T |
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| Q |
313 |
tgttcatagtgtcatgcgtttgttggcgcacaataaaatcttcgcaattgtgaagatagacgacaacaaagaagcatatgctctttct |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8066729 |
tgttcatagtgtcatgcgtttattggcgcacaataaaatcttcgcaattgtgaagatagacgacaacaaagaagcatatgctctttct |
8066642 |
T |
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