View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17492_low_9 (Length: 384)

Name: NF17492_low_9
Description: NF17492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17492_low_9
NF17492_low_9
[»] chr8 (11 HSPs)
chr8 (82-384)||(30702409-30702713)
chr8 (82-384)||(18004481-18004787)
chr8 (82-274)||(30288363-30288556)
chr8 (85-156)||(6744397-6744468)
chr8 (85-167)||(6735050-6735132)
chr8 (85-156)||(6654659-6654730)
chr8 (85-159)||(23636717-23636791)
chr8 (19-59)||(30702348-30702388)
chr8 (300-363)||(23636935-23636998)
chr8 (91-144)||(10706022-10706075)
chr8 (85-149)||(28211152-28211216)
[»] chr3 (7 HSPs)
chr3 (82-384)||(11294777-11295083)
chr3 (85-166)||(54264852-54264932)
chr3 (85-166)||(31887978-31888059)
chr3 (96-164)||(28033685-28033753)
chr3 (82-137)||(31882085-31882140)
chr3 (100-159)||(20769422-20769481)
chr3 (85-142)||(9167012-9167069)
[»] chr1 (9 HSPs)
chr1 (82-374)||(32590668-32590964)
chr1 (85-166)||(51410905-51410986)
chr1 (85-166)||(4693981-4694062)
chr1 (85-167)||(3854164-3854246)
chr1 (85-158)||(51987640-51987713)
chr1 (85-149)||(43912955-43913019)
chr1 (85-143)||(42914026-42914084)
chr1 (84-113)||(28970573-28970602)
chr1 (91-144)||(50818428-50818481)
[»] chr2 (8 HSPs)
chr2 (93-384)||(3250235-3250530)
chr2 (82-384)||(35431148-35431454)
chr2 (85-166)||(28920307-28920388)
chr2 (85-158)||(33560395-33560468)
chr2 (108-274)||(23249836-23250003)
chr2 (93-149)||(3474652-3474708)
chr2 (91-149)||(24490062-24490120)
chr2 (238-274)||(43450628-43450664)
[»] chr4 (9 HSPs)
chr4 (82-384)||(55109388-55109694)
chr4 (82-155)||(39235835-39235908)
chr4 (85-166)||(17403725-17403806)
chr4 (93-143)||(19145561-19145611)
chr4 (240-273)||(3030657-3030690)
chr4 (92-129)||(20188483-20188520)
chr4 (91-144)||(53101483-53101536)
chr4 (85-167)||(5475292-5475374)
chr4 (93-149)||(1858296-1858352)
[»] chr5 (11 HSPs)
chr5 (85-167)||(42366297-42366379)
chr5 (92-259)||(22166406-22166574)
chr5 (85-166)||(24233704-24233785)
chr5 (85-166)||(35246202-35246283)
chr5 (85-167)||(6218652-6218734)
chr5 (89-167)||(19841852-19841930)
chr5 (90-145)||(17204796-17204851)
chr5 (92-150)||(31293486-31293544)
chr5 (109-149)||(34771553-34771593)
chr5 (109-149)||(34782498-34782538)
chr5 (85-141)||(23924460-23924516)
[»] chr7 (10 HSPs)
chr7 (85-167)||(42266154-42266236)
chr7 (85-159)||(34148508-34148582)
chr7 (85-159)||(34178542-34178616)
chr7 (83-167)||(21415588-21415672)
chr7 (92-159)||(29672978-29673045)
chr7 (108-166)||(923890-923948)
chr7 (85-149)||(19314906-19314970)
chr7 (92-144)||(25480957-25481009)
chr7 (92-143)||(36781634-36781685)
chr7 (93-142)||(13451275-13451324)
[»] chr6 (9 HSPs)
chr6 (90-164)||(18093547-18093621)
chr6 (88-167)||(15473065-15473144)
chr6 (88-167)||(15160275-15160354)
chr6 (88-167)||(15170287-15170366)
chr6 (88-167)||(15179059-15179138)
chr6 (85-149)||(3024928-3024992)
chr6 (88-124)||(15183173-15183209)
chr6 (119-167)||(15183894-15183942)
chr6 (85-149)||(26585849-26585913)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 82 - 384
Target Start/End: Original strand, 30702409 - 30702713
Alignment:
Q  82 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngaca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  30702409 cattactccataacacccatacaaattaaagggtgccgccaccagtcattataactgaaagcggaagttagcctattagcctttaatcaagaaaaagaca 30702508  T
Q  182 caaactttacattgtcaaaaatttgttccaagtcttgtgctttgtctctgaagatctgttgtttctttctttccaaatgatccaaacacaagcgtgcatc 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30702509 caaactttacattgtcaaaaatttattccaagtcttgtgctttgtctctgaagatctgttgtttctttctttccaaacgatccaaacacaagcgtgcatc 30702608  T
Q  282 acctt--nnnnnnngtatgagtaaatcgtggtaaccccgacatataactaaactgttgaagatgatcactgacagagtctggagagatgaaataaatacc 379  Q
    |||||         |||||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |    
T  30702609 accttaaaaaaaaagtatgagtaaatcgcggtaaccccgccatataactaaactgccgaagatgatcactgacagagtctggagagatgaaataaatagc 30702708  T
Q  380 tagcc 384  Q
    |||||    
T  30702709 tagcc 30702713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 82 - 384
Target Start/End: Original strand, 18004481 - 18004787
Alignment:
Q  82 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngaca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |        ||||    
T  18004481 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataattgaaagctgaagttagcctattagcctttaaccaagaaaaagaca 18004580  T
Q  182 caaactttacattgtcaaaaatttgttccaagtcttgtgctttgtctctgaagat-ctgttgtttctttctttccaaatgatccaaacacaagcgtgc-- 278  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||| ||||||| |||||||||||||| |||||||  ||| |||  || || |||      
T  18004581 caaactttacattgtcaaaatgttgttccaagtcttctgctttgtctttgaagatcctgttgtttctttccttccaaacaatctaaatgcatgcatgcca 18004680  T
Q  279 -atcaccttnnnnnnngtatgagtaaatcgtggtaaccccgacatataactaaactgttgaagatgatcactgacagagtctggagagatgaaataaata 377  Q
     ||||||||       | ||||||||||||  ||||||||| ||||| || |||||| || ||| |||||||||||||| |||| |||||||||||||||    
T  18004681 gatcaccttgaaaaaagaatgagtaaatcgcagtaaccccgccatatgaccaaactgatgtagacgatcactgacagagcctggggagatgaaataaata 18004780  T
Q  378 cctagcc 384  Q
    || ||||    
T  18004781 ccaagcc 18004787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 82 - 274
Target Start/End: Complemental strand, 30288556 - 30288363
Alignment:
Q  82 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngaca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||          ||||    
T  30288556 cattactccataacacccatacaaattaaagggtgccgccacccgtcattataactgaaagctgaagttagcctattagcctttaacgaagaaaatgaca 30288457  T
Q  182 caaactttacattgtcaaaaatttgttccaagtcttgtgctttgtctctgaagat-ctgttgtttctttctttccaaatgatccaaacacaagc 274  Q
    ||||  ||||||||||||| | || |||| |||||| || ||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||    
T  30288456 caaatattacattgtcaaagagtttttcctagtcttttgttttgtctttgaagatcctgttgtttctttccttccaaacgatccaaacacaagc 30288363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 6744468 - 6744397
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagccta 156  Q
    |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||| ||||||    
T  6744468 tactccctaacacccatacaaattaacgggtgtcgccaccagtcattataactgaaagctgaagtgagccta 6744397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 6735132 - 6735050
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||| ||||||||||||||||||| || || ||||||| |||||||||||||||||| ||||| |||||| ||||| ||||    
T  6735132 tactccctaacacccatacaaattaacggatgtcgccaccagtcattataactgaaagctgaagtgagcctactagcccttaa 6735050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 6654730 - 6654659
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagccta 156  Q
    |||||| ||||||||||||||||||| || || ||||||| |||||||||||||||||| ||||| ||||||    
T  6654730 tactccctaacacccatacaaattaacggatgtcgccaccagtcattataactgaaagctgaagtgagccta 6654659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 23636717 - 23636791
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctatta 159  Q
    |||||||||||||||||||| | ||||||||||  ||||| ||| |||||||||||||||||||| ||| |||||    
T  23636717 tactccataacacccatacataataaagggtgcatccaccagtcgttataactgaaagcggaagtgagcatatta 23636791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 30702348 - 30702388
Alignment:
Q  19 gaatacaaggttcaggtatttgttgcctaacaacaaacaca 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30702348 gaatacaaggttcaggtatttgttgcctaacaacaaacaca 30702388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 363
Target Start/End: Original strand, 23636935 - 23636998
Alignment:
Q  300 gtaaatcgtggtaaccccgacatataactaaactgttgaagatgatcactgacagagtctggag 363  Q
    ||||||||||||||||||| ||||| || |||||| |||||||||||||  || ||||||||||    
T  23636935 gtaaatcgtggtaaccccgccatatgaccaaactggtgaagatgatcacgtaccgagtctggag 23636998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 10706022 - 10706075
Alignment:
Q  91 ataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcg 144  Q
    ||||||||||||||||| ||  | || |||||||||||||||||||||||||||    
T  10706022 ataacacccatacaaatcaacagatgtcgccaccggtcattataactgaaagcg 10706075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 28211152 - 28211216
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    |||||| |||||| | |||| | |||||| |||||||| | |||||||||||||||||| |||||    
T  28211152 tactccctaacacacgtacataataaaggatgccgccatcagtcattataactgaaagcagaagt 28211216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 82 - 384
Target Start/End: Complemental strand, 11295083 - 11294777
Alignment:
Q  82 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngaca 181  Q
    ||||||||||||||| |||||||||||||||| ||||||||||  ||| ||||||||||||| ||||| || |||||||||||||| |        ||||    
T  11295083 cattactccataacatccatacaaattaaaggatgccgccaccaatcactataactgaaagctgaagtaaggctattagcctttaaccaaaagaaagaca 11294984  T
Q  182 caaactttacattgtcaaaaatttgttccaagtcttgtgctttgtctctgaagatc-tgttgtttctttctttccaaatgatccaaacacaagcgtgc-- 278  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  |||||||| ||| ||||||||| ||||||| |||||||||||||||||||      
T  11294983 caaactttacattgtcaacaatttgttccaagtcttgtgctttgtcattgaagatcatgtagtttctttccttccaaaggatccaaacacaagcgtgcca 11294884  T
Q  279 -atcaccttnnnnnnngtatgagtaaatcgtggtaaccccgacatataactaaactgttgaagatgatcactgacagagtctggagagatgaaataaata 377  Q
     ||||||||       | |||||||||||| |||||||||| ||| | | ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  11294883 gatcaccttgagaaaagaatgagtaaatcgcggtaaccccgccatttgagtaagctgttgaagatgatcactggcagagtctggagagatgaaataaata 11294784  T
Q  378 cctagcc 384  Q
    |||||||    
T  11294783 cctagcc 11294777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 54264932 - 54264852
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagccttta 166  Q
    |||||||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||    
T  54264932 tactccataacacccatacaaaataa-gggtgccgccacccgtcattataattgaaagcggaagttaacctattagtcttta 54264852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 31887978 - 31888059
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagccttta 166  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||||||||| | ||||| |||||||   ||||||||||||    
T  31887978 tactccataacactcatataaataaaagggtgccgccaccggtcattataattaaaagctgaagttaatttattagccttta 31888059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 28033685 - 28033753
Alignment:
Q  96 acccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctt 164  Q
    ||||||||||||||| |||| |||||| | |||||||||||||||||||||||| ||| ||||||||||    
T  28033685 acccatacaaattaaggggtaccgccatcagtcattataactgaaagcggaagtgagcatattagcctt 28033753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 31882085 - 31882140
Alignment:
Q  82 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataact 137  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  31882085 cattactccataacactcatacaaattaaagggtgccgccacgagtcattataact 31882140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 20769481 - 20769422
Alignment:
Q  100 atacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctatta 159  Q
    |||||||||||||| ||| |||||| |||||||||| | |||||||||||||| ||||||    
T  20769481 atacaaattaaaggatgctgccaccagtcattataatttaaagcggaagttagtctatta 20769422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 9167069 - 9167012
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaag 142  Q
    |||||| ||||||||||||| | ||||||||||||||||| |||||  ||||||||||    
T  9167069 tactccttaacacccatacataataaagggtgccgccaccagtcatagtaactgaaag 9167012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 82 - 374
Target Start/End: Original strand, 32590668 - 32590964
Alignment:
Q  82 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngaca 181  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |        ||||    
T  32590668 cattacaccataacacccatacaaattaaagggtgccaccaccggtcattataactgaaagcggaagttagcctattagcctttaaccaagtaaaagaca 32590767  T
Q  182 caaactttacattgtcaaaaatttgttccaagtcttgtgctttgtctctgaagat-ctgttgtttctttctttccaaatgatccaaacacaagcgt---g 277  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||  |||||| |||||||||||||| ||||||| ||||||  |||||||||   |    
T  32590768 caaactttacattgtcaaaaatttgttccaagtcttgtattttgtcttcgaagatcctgttgtttctttcattccaaacgatccagtcacaagcgtgtcg 32590867  T
Q  278 catcaccttnnnnnnngtatgagtaaatcgtggtaaccccgacatataactaaactgttgaagatgatcactgacagagtctggagagatgaaataa 374  Q
     ||||| ||       | | |||||||||| |||||||||| |||||||||| |||| |||||||||   |||| ||||||||||||||||||||||    
T  32590868 gatcacattaaaaaaagaacgagtaaatcgcggtaaccccgccatataactatactgctgaagatgaattctgatagagtctggagagatgaaataa 32590964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 51410986 - 51410905
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagccttta 166  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  51410986 tactccataacacccatacaagttaaagggttccgccaccagtcattataactgaaagctgaagttagcctattagccttta 51410905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 4694062 - 4693981
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagccttta 166  Q
    ||||||||||||| ||||||| |||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  4694062 tactccataacacacatacaagttaaagggtgtcgccaccattcattataactgaaagctgaagttagcctattagccttta 4693981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 3854164 - 3854246
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| ||| |||| ||| ||||    
T  3854164 tactccctaacacccatacaaattaaagggtgtcgccaccagtcattataactgaaagctgaagtgagcttattcgcccttaa 3854246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 51987640 - 51987713
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctatt 158  Q
    |||||| ||||||||||||||||||||||||| |||||  ||||||||||||||||||| ||||||| ||||||    
T  51987640 tactccctaacacccatacaaattaaagggtgtcgccataggtcattataactgaaagctgaagttaacctatt 51987713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 43912955 - 43913019
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| |||||    
T  43912955 tactccataacacccatacaagttaaagggtgccgccaccagtcagtataactgaaagctgaagt 43913019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 42914084 - 42914026
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagc 143  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||||||| ||||||||    
T  42914084 tactccataacatccatacaagttaaagggtgccgccaccagtcattatagctgaaagc 42914026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 28970602 - 28970573
Alignment:
Q  84 ttactccataacacccatacaaattaaagg 113  Q
    ||||||||||||||||||||||||||||||    
T  28970602 ttactccataacacccatacaaattaaagg 28970573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 50818481 - 50818428
Alignment:
Q  91 ataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcg 144  Q
    ||||||||||||||||| || |  ||||| |||| |||||||||||||||||||    
T  50818481 ataacacccatacaaatcaacgcatgccgtcaccagtcattataactgaaagcg 50818428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 93 - 384
Target Start/End: Original strand, 3250235 - 3250530
Alignment:
Q  93 aacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngacacaaactttaca 192  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||| |        ||||||| |||||||    
T  3250235 aacaaccataccaattaaagggtgccgccaccagtcattataactgaaagctgaatttagcctattagcctgtaaccaaaaaaaggacacaagctttaca 3250334  T
Q  193 ttgtcaaaaatttgttccaagtcttgtgctttgtctctgaagat-ctgttgtttctttctttccaaatgatccaaacacaagcgtgc---atcaccttnn 288  Q
    |||||||||| |||||||||||||| |||||||||| ||||||| |||||||||||||| |||||||  |||||||| ||||| |||    |||||||      
T  3250335 ttgtcaaaaagttgttccaagtcttatgctttgtctttgaagatcctgttgtttctttccttccaaacaatccaaacgcaagcatgccaggtcaccttga 3250434  T
Q  289 nnnnngtatgagtaaatcgtggtaaccccgacatataactaaactgttgaagatgatcactgacagagtctggagagatgaaataaatacctagcc 384  Q
         | |||||||||||| |||||||||| ||| | || ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3250435 gataagaatgagtaaatcgcggtaaccccgccatgtgaccaaattgatgaagatgatcactgacagagtctggagagatgaaataaataccgagcc 3250530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 82 - 384
Target Start/End: Complemental strand, 35431454 - 35431148
Alignment:
Q  82 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngaca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |        ||||    
T  35431454 cattactccataacacccatacaaattaaagggtgccgccaccagtcattataactgaaagctgaagttagcctattagcatttaaccaagaaaatgaca 35431355  T
Q  182 caaactttacattgtcaaaaatttgttccaagtcttgtgctttgtctctgaagatc-tgttgtttctttctttccaaatgatccaaacacaagcgtgc-- 278  Q
    |||| |||||||||||||| | |||||||||||||| |||||||||| | |||||| |||||||| |||| |||||||  ||||| || ||||| |||      
T  35431354 caaattttacattgtcaaatagttgttccaagtcttctgctttgtcttttaagatcatgttgtttgtttccttccaaacaatccacacgcaagcatgcca 35431255  T
Q  279 -atcaccttnnnnnnngtatgagtaaatcgtggtaaccccgacatataactaaactgttgaagatgatcactgacagagtctggagagatgaaataaata 377  Q
     ||||| ||       | ||| |||||||| |||||| | | ||| | || |||||| || |||||| ||||||||||||||||||||||||||||||||    
T  35431254 aatcactttgaaataagaatgtgtaaatcgcggtaactctgccatgtgaccaaactgatgtagatgagcactgacagagtctggagagatgaaataaata 35431155  T
Q  378 cctagcc 384  Q
    || ||||    
T  35431154 ccaagcc 35431148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 28920307 - 28920388
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagccttta 166  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  28920307 tactccataacacccatacaaagtaaagggtgccgccaccagtcattataactgaaagcggaagttagcgtattagccttta 28920388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 33560468 - 33560395
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctatt 158  Q
    |||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||| ||||||||||||||    
T  33560468 tactccctaacacccatacaaattaaagggtgtcgccacaagtcattataactgaaagctgaagttagcctatt 33560395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 274
Target Start/End: Complemental strand, 23250003 - 23249836
Alignment:
Q  108 taaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngacacaaactttacattgtcaaaaatttgt 207  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||| |        |||| ||||||||||||||| || |  ||     
T  23250003 taaagggttccgccaccagtcattataactgaaagcggaagttagcatattagcttttaaccaagaaaaagacataaactttacattgtctaataagtga 23249904  T
Q  208 tccaagtcttgtgctttgtctctgaagat-ctgttgtttctttctttccaaatgatccaaacacaagc 274  Q
     |||| || || ||||||| | | || || |||||||||||||| |||||||  ||||||||||||||    
T  23249903 accaaatcgtgagctttgtttttaaaaatcctgttgtttctttccttccaaacaatccaaacacaagc 23249836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 3474708 - 3474652
Alignment:
Q  93 aacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    ||||| ||||||||| || || ||||||||||||||||||||||| |||||| ||||    
T  3474708 aacacgcatacaaatcaacggatgccgccaccggtcattataactaaaagcgaaagt 3474652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 24490062 - 24490120
Alignment:
Q  91 ataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    |||||||||||||||| |||||| || ||||| | ||| ||||||||||||||| ||||    
T  24490062 ataacacccatacaaagtaaaggatgtcgccatccgtcgttataactgaaagcgaaagt 24490120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 43450664 - 43450628
Alignment:
Q  238 tgttgtttctttctttccaaatgatccaaacacaagc 274  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  43450664 tgttgtttctttccttccaaatgagccaaacacaagc 43450628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 384
Target Start/End: Complemental strand, 55109694 - 55109388
Alignment:
Q  82 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngaca 181  Q
    |||||||||||||||||||| ||||||||||   ||||||||  |||||||||||||||||| ||||||   || ||||||||||| |        ||||    
T  55109694 cattactccataacacccatgcaaattaaagaacgccgccactagtcattataactgaaagcagaagttttgcttttagcctttaaccaagaaaaagaca 55109595  T
Q  182 caaactttacattgtcaaaaatttgttccaagtcttgtgctttgtctctgaagat-ctgttgtttctttctttccaaatgatccaaacacaagcgtgc-- 278  Q
    |||||||||| || ||| | | ||| |||||||||| |  ||||||| ||||||| |||||||||||||| || |||| ||||||||| ||||| |||      
T  55109594 caaactttactttatcagataattgatccaagtcttctattttgtctttgaagatcctgttgtttctttcctttcaaacgatccaaacgcaagcatgcca 55109495  T
Q  279 -atcaccttnnnnnnngtatgagtaaatcgtggtaaccccgacatataactaaactgttgaagatgatcactgacagagtctggagagatgaaataaata 377  Q
     ||||| ||       | ||| ||||| || |||||||||| ||| | || |||||| ||||||||||||| ||  |||||| ||||||||||  |||||    
T  55109494 gatcactttgaaaaaagaatgggtaaaacgcggtaaccccgccatgtgaccaaactgatgaagatgatcacggatggagtctcgagagatgaatgaaata 55109395  T
Q  378 cctagcc 384  Q
    |||||||    
T  55109394 cctagcc 55109388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 39235908 - 39235835
Alignment:
Q  82 cattactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcct 155  Q
    |||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||| |||||||||||    
T  39235908 cattactccataacacccatgcaaatcaaagggtgccgtcaccagtcattataactgaaagctgaagttagcct 39235835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 17403806 - 17403725
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagccttta 166  Q
    ||||||||||| |||||||||  ||||||||||||||| | |||||||||||||||||| |||||||| |||||| ||||||    
T  17403806 tactccataacccccatacaagctaaagggtgccgccatcagtcattataactgaaagctgaagttagtctattaaccttta 17403725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 19145611 - 19145561
Alignment:
Q  93 aacacccatacaaattaaagggtgccgccaccggtcattataactgaaagc 143  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  19145611 aacacccatacataataaagggtgccgccaccagtcattataactgaaagc 19145561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 3030690 - 3030657
Alignment:
Q  240 ttgtttctttctttccaaatgatccaaacacaag 273  Q
    ||||||||||||||||||||||||||||||||||    
T  3030690 ttgtttctttctttccaaatgatccaaacacaag 3030657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 20188520 - 20188483
Alignment:
Q  92 taacacccatacaaattaaagggtgccgccaccggtca 129  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  20188520 taacacccatacaaaataaagggtgccgccaccggtca 20188483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 53101536 - 53101483
Alignment:
Q  91 ataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcg 144  Q
    ||||||||||| ||||| || || |||||||||| |||||||||||||||||||    
T  53101536 ataacacccatccaaatcaacggatgccgccaccagtcattataactgaaagcg 53101483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 5475292 - 5475374
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||| ||||||||| ||| | |||||||| |||||||| | |||| |||| |||||||||||| ||| | ||||| |||||    
T  5475292 tactccctaacacccaaacatactaaagggttccgccacccgccattgtaaccgaaagcggaagtgagcatcttagcttttaa 5475374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 1858352 - 1858296
Alignment:
Q  93 aacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    ||||||||| |||| ||| || |||||||||| ||||||||||||||| ||| ||||    
T  1858352 aacacccatgcaaagtaatggatgccgccaccagtcattataactgaaggcgaaagt 1858296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 42366379 - 42366297
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||| ||||    
T  42366379 tactccctaacacccatacaaattaaagggtgtcgccaccggtcattataattgaaagctgaagttagcctattcgcccttaa 42366297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 259
Target Start/End: Complemental strand, 22166574 - 22166406
Alignment:
Q  92 taacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaatcnnnnnnnngacacaaactttac 191  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||||  ||||||||||||| ||| |||| |        || |||||||||||    
T  22166574 taacacccatacaaattaaagggtgtcgccaccagtaattataactgaaagctcaagttagcctattcgcccttaaccaagaaaaagatacaaactttac 22166475  T
Q  192 attgtcaaaaatttgttccaagtcttgtgctttgtctctgaagat-ctgttgtttctttctttccaaat 259  Q
     ||||  || | |||  |||||||| ||||||||| ||||||||| || ||||||||||| ||||||||    
T  22166474 tttgtttaataattgaaccaagtctagtgctttgtttctgaagatcctattgtttctttccttccaaat 22166406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 24233704 - 24233785
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagccttta 166  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| ||||||| |||||  |||||||    
T  24233704 tactccataacacccatacaagttaaatggtgccgccaccagtcattataactgaaagcagaagttaacctatgcgccttta 24233785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 35246202 - 35246283
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagccttta 166  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||| ||||| | | ||| ||||||||    
T  35246202 tactccataacactcatacaagttaaagggtgccgccaccagtcattataactgaaagctgaagtgaacatatgagccttta 35246283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 6218734 - 6218652
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||| ||||||| ||||||||||| ||||| | ||||| |||||||||||||||||| ||||| |||||||| ||| ||||    
T  6218734 tactccctaacacctatacaaattaacgggtgtcaccaccagtcattataactgaaagctgaagtgagcctattcgcccttaa 6218652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 19841852 - 19841930
Alignment:
Q  89 ccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||| || |||||||| ||||||||||||||| | ||||||||||||||||  |||||| ||| ||||||| |||||    
T  19841852 ccataatactcatacaaagtaaagggtgccgccatccgtcattataactgaaaatggaagtgagcatattagcatttaa 19841930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 17204796 - 17204851
Alignment:
Q  90 cataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcgg 145  Q
    ||||||||||||||| | |||||||||||||||||||||  |||||||||| ||||    
T  17204796 cataacacccatacatagtaaagggtgccgccaccggtcggtataactgaaggcgg 17204851  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 31293486 - 31293544
Alignment:
Q  92 taacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagtt 150  Q
    ||||||||||||| | ||||||||||||||| | |||||||||||||||| | ||||||    
T  31293486 taacacccatacataataaagggtgccgccatcagtcattataactgaaaacagaagtt 31293544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 34771593 - 34771553
Alignment:
Q  109 aaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  34771593 aaagggtgccgccaccggtcagtataactgaaagcagaagt 34771553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 34782538 - 34782498
Alignment:
Q  109 aaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  34782538 aaagggtgccgccaccggtcagtataactgaaagcagaagt 34782498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 23924460 - 23924516
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaa 141  Q
    |||||| ||| ||||||||| | |||||||| || ||||| ||||||||||||||||    
T  23924460 tactccctaagacccatacataataaagggttcctccaccagtcattataactgaaa 23924516  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 42266154 - 42266236
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  || ||||||| |||||    
T  42266154 tactccctaacacccatacaaagtaaagggtgccgccaccggtcgttataactgaaagcggaagtgggcatattagcttttaa 42266236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 34148508 - 34148582
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctatta 159  Q
    ||||||||||||||||||||| |||  || |||| ||||| |||||||||||||||||| |||||||||||||||    
T  34148508 tactccataacacccatacaagttacgggatgcccccacccgtcattataactgaaagctgaagttagcctatta 34148582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 34178616 - 34178542
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctatta 159  Q
    ||||||||||||||||||||| |||  || |||| ||||| |||||||||||||||||| |||||||||||||||    
T  34178616 tactccataacacccatacaagttacgggatgcccccacccgtcattataactgaaagctgaagttagcctatta 34178542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 21415588 - 21415672
Alignment:
Q  83 attactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    ||||| ||| |||||||||||||  ||||||||||||||||| ||||| |||||| ||  || |||| ||| |||||||||||||    
T  21415588 attacaccaaaacacccatacaagataaagggtgccgccaccagtcatgataactaaagacgaaagtgagcatattagcctttaa 21415672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 29673045 - 29672978
Alignment:
Q  92 taacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctatta 159  Q
    |||||||| |||| | |||||| |||||||||||||  ||||||||||||||||||||  ||||||||    
T  29673045 taacacccgtacatagtaaaggttgccgccaccggttgttataactgaaagcggaagtgtgcctatta 29672978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 923948 - 923890
Alignment:
Q  108 taaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagccttta 166  Q
    |||| |||||||||||||||||||||||||||||||| | || ||| |||| |||||||    
T  923948 taaaaggtgccgccaccggtcattataactgaaagcgaatgtgagcatattggccttta 923890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 19314906 - 19314970
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    |||||| ||||||||||| | | |||||||  ||||||||||||||| |||| ||||||||||||    
T  19314906 tactccctaacacccatatataataaagggctccgccaccggtcattgtaaccgaaagcggaagt 19314970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 25481009 - 25480957
Alignment:
Q  92 taacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcg 144  Q
    ||||||||||||| | |||||||| |||||||| |||| ||||||||||||||    
T  25481009 taacacccatacataataaagggtcccgccaccagtcaatataactgaaagcg 25480957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 36781685 - 36781634
Alignment:
Q  92 taacacccatacaaattaaagggtgccgccaccggtcattataactgaaagc 143  Q
    ||||||||||||| | ||| |||| |||||||||||| ||||||||||||||    
T  36781685 taacacccatacataataaggggttccgccaccggtcgttataactgaaagc 36781634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 13451324 - 13451275
Alignment:
Q  93 aacacccatacaaattaaagggtgccgccaccggtcattataactgaaag 142  Q
    |||||||||||| | |||||| |||||||||| |||||||||||| ||||    
T  13451324 aacacccatacataataaaggatgccgccaccagtcattataactaaaag 13451275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 18093621 - 18093547
Alignment:
Q  90 cataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctt 164  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||    
T  18093621 cataacacccatacaagttaaagggtgccgccaccagtcattgtaactgaaagctgaagctagcctattagcctt 18093547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 15473144 - 15473065
Alignment:
Q  88 tccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    ||||||||||||||||| | ||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||||| |||||    
T  15473144 tccataacacccatacatagtaaagggtgccgcaaccagtcattataactgaaagcagaagtcagcatattagcttttaa 15473065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 15160275 - 15160354
Alignment:
Q  88 tccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||| |||||| ||||| | ||||| ||||||||||| |||||||||||||||||||||||||||| | ||||| |||||    
T  15160275 tccacaacacctatacatagtaaagagtgccgccaccagtcattataactgaaagcggaagttagcatgttagcttttaa 15160354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 15170287 - 15170366
Alignment:
Q  88 tccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||||||| |||||| | |||||||| ||||| || |||||||||||||||||||||||| ||| ||||||| |||||    
T  15170287 tccataacacacatacatagtaaagggtaccgcctccagtcattataactgaaagcggaagtcagcatattagcttttaa 15170366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 15179059 - 15179138
Alignment:
Q  88 tccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||||||| |||||| | |||||||| ||||| || |||||||||||||||||||||||| ||| ||||||| |||||    
T  15179059 tccataacacacatacatagtaaagggtaccgcctccagtcattataactgaaagcggaagtcagcatattagcttttaa 15179138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 3024928 - 3024992
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    |||||||| ||| ||| ||| | |||||||||||||||||||||| |||||||||||||| ||||    
T  3024928 tactccatgacatccacacataataaagggtgccgccaccggtcagtataactgaaagcgtaagt 3024992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 15183173 - 15183209
Alignment:
Q  88 tccataacacccatacaaattaaagggtgccgccacc 124  Q
    ||||||||||||||||| | |||||||||||||||||    
T  15183173 tccataacacccatacatagtaaagggtgccgccacc 15183209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 15183894 - 15183942
Alignment:
Q  119 gccaccggtcattataactgaaagcggaagttagcctattagcctttaa 167  Q
    |||||| |||||||||||||||||||||||| ||| |||| || |||||    
T  15183894 gccaccagtcattataactgaaagcggaagtcagcatatttgcttttaa 15183942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 26585849 - 26585913
Alignment:
Q  85 tactccataacacccatacaaattaaagggtgccgccaccggtcattataactgaaagcggaagt 149  Q
    |||||| ||| ||||||||| | |||||||  |||||||| |||||| |||| ||||||||||||    
T  26585849 tactccctaatacccatacataataaagggctccgccaccagtcattgtaaccgaaagcggaagt 26585913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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