View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_high_12 (Length: 364)
Name: NF17493_high_12
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 7969306 - 7969180
Alignment:
| Q |
1 |
cacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataatacattattgttttttctgttttgtcttgagc |
100 |
Q |
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| T |
7969306 |
cacctcatcatctgccactgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataatacattactgttttttctgttttgtcttgagc |
7969207 |
T |
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| Q |
101 |
tgtataagatttatgttctattaagga |
127 |
Q |
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| T |
7969206 |
tgtataagatttatgttctattaagga |
7969180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 37577796 - 37577873
Alignment:
| Q |
1 |
cacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataatacattattg |
78 |
Q |
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| T |
37577796 |
cacctcattgtctgccgccgttggtgacccttgtcatgaagacaatcaccatataagttgagaagtcatacattattg |
37577873 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32768585 - 32768662
Alignment:
| Q |
1 |
cacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataatacattattg |
78 |
Q |
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| T |
32768585 |
cacctcatcgtttgccgccgtcggggacccttatcatgaagacaaacaccctataagtagtaaagtaatacattattg |
32768662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32651237 - 32651175
Alignment:
| Q |
1 |
cacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagaga |
63 |
Q |
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| T |
32651237 |
cacctcatcatctgctgccatcggcaaccgttatcacgaagacagtcaccctataagtagaga |
32651175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28475452 - 28475529
Alignment:
| Q |
1 |
cacctcatcatctgccgctgtcggcaacccttgtcatgaagacaat-ctccctataagtagagaaataatacattatt |
77 |
Q |
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| T |
28475452 |
cacctcatcgtccaccgctgtcggcaacccttatcgtgaagacaatccaccctatatgtagagaagtcatgcattatt |
28475529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 25470041 - 25470117
Alignment:
| Q |
2 |
acctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataatacattattg |
78 |
Q |
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| T |
25470041 |
acctcatcatccgctgccatcggcgacctgtatcatgaagacaatcaccctataagtagaaaattaatatattattg |
25470117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 2166159 - 2166106
Alignment:
| Q |
27 |
acccttgtcatgaagacaatctccctataagtagagaaata--atacattattg |
78 |
Q |
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|||||||||||||||||||||||| ||||| |||||| ||| ||||||||||| |
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| T |
2166159 |
acccttgtcatgaagacaatctccttataactagagagatatcatacattattg |
2166106 |
T |
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