View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_high_25 (Length: 235)
Name: NF17493_high_25
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 8716769 - 8716633
Alignment:
| Q |
21 |
cttttgttgttactttatattcacacgtcaacaccaaaaaagtcttaggttacattattttaagcgagacaattccattgtgcttgagcaacatggagat |
120 |
Q |
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| T |
8716769 |
cttttgttgttactttatattcacacgtcaacaccaaagaagtcttagattaccttattttaagcgagataattccattgtgcttgagcaacatggaaat |
8716670 |
T |
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| Q |
121 |
cggaaatgaaatatcaaacaatgtgagtttctctatt |
157 |
Q |
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| T |
8716669 |
cggaaatgaaatattaaacaaagtgagtttctctatt |
8716633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 9068656 - 9068520
Alignment:
| Q |
21 |
cttttgttgttactttatattcacacgtcaacaccaaaaaagtcttaggttacattattttaagcgagacaattccattgtgcttgagcaacatggagat |
120 |
Q |
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| T |
9068656 |
cttttgttgttactttatattcacacgtcaacaccaaagaagtcttagattaccttattttaagcgagataattccattgtgcttgagcaacatggaaat |
9068557 |
T |
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| Q |
121 |
cggaaatgaaatatcaaacaatgtgagtttctctatt |
157 |
Q |
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| T |
9068556 |
cggaaatgaaatattaaacaaagtgagtttctctatt |
9068520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 8723103 - 8722967
Alignment:
| Q |
21 |
cttttgttgttactttatattcacacgtcaacaccaaaaaagtcttaggttacattattttaagcgagacaattccattgtgcttgagcaacatggagat |
120 |
Q |
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| T |
8723103 |
cttttgttgttactttagattcgcaagtcagcaccaaagaagttttaggttaccttatttcaagtgagataattccattgcgctagagcaacatggaaat |
8723004 |
T |
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| Q |
121 |
cggaaatgaaatatcaaacaatgtgagtttctctatt |
157 |
Q |
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| T |
8723003 |
cggaaatgaaatatccaaaactgttagtttctctatt |
8722967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 9074990 - 9074854
Alignment:
| Q |
21 |
cttttgttgttactttatattcacacgtcaacaccaaaaaagtcttaggttacattattttaagcgagacaattccattgtgcttgagcaacatggagat |
120 |
Q |
| |
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||||||||||||||||| |||| || |||| ||||||| |||| ||||||||| |||||| ||| |||| |||||||||| ||| |||||||||||| || |
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| T |
9074990 |
cttttgttgttactttagattcgcaagtcagcaccaaagaagttttaggttaccttatttcaagtgagataattccattgcgctagagcaacatggaaat |
9074891 |
T |
|
| Q |
121 |
cggaaatgaaatatcaaacaatgtgagtttctctatt |
157 |
Q |
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| T |
9074890 |
cggaaatgaaatatccaaaactgttagtttctctatt |
9074854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 24127779 - 24127643
Alignment:
| Q |
21 |
cttttgttgttactttatattcacacgtcaacaccaaaaaagtcttaggttacattattttaagcgagacaattccattgtgcttgagcaacatggagat |
120 |
Q |
| |
|
||||||||| ||||| ||||||||| || ||||||||| ||||||| |||||| |||||||||| |||| ||||||| | |||||||||||||||||||| |
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| T |
24127779 |
cttttgttgatacttgatattcacaggttaacaccaaagaagtcttgggttaccttattttaagtgagataattccactctgcttgagcaacatggagat |
24127680 |
T |
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| Q |
121 |
cggaaatgaaatatcaaacaatgtgagtttctctatt |
157 |
Q |
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||| |||||||||||||| | ||| |||||||||||| |
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| T |
24127679 |
cggcaatgaaatatcaaaaactgttagtttctctatt |
24127643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 45160486 - 45160625
Alignment:
| Q |
21 |
cttttgttgttactttatattcacacgtcaacaccaaaaaagtcttaggttacattattttaagcgagacaattccattgtgcttgagcaacatggagat |
120 |
Q |
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||||||||| ||||| ||||||||| | ||||| ||| |||| || |||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45160486 |
cttttgttgatacttgatattcacaggataacacaaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagat |
45160585 |
T |
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| Q |
121 |
cggaaatgaaatatcaaacaatgtgagtttctctattctt |
160 |
Q |
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|||||||||||||||| | | ||| ||||||||||||||| |
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| T |
45160586 |
cggaaatgaaatatcacaaactgttagtttctctattctt |
45160625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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