View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_high_29 (Length: 206)
Name: NF17493_high_29
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 44843379 - 44843208
Alignment:
| Q |
19 |
aagtctaaccctataaccattaaccacactctctctaaccctaagccctaaatacctctgctcccctctgcgtggaattcaaccaatggcttgtagctac |
118 |
Q |
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| T |
44843379 |
aagtctaaccctataaccattaaccacactctctctaaccctaagccctaa-tacctctgctcccctctgcgtggaattcaatcaatggcttgtagctac |
44843281 |
T |
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| Q |
119 |
caccacgataatgaagttgacctgaagaacttctccccaaaacttcgacaacaaatgcacgattacagaataa |
191 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44843280 |
caccacgataatgaagctgacctgaagaacttctccccaaaacttcgacaacaaatgcatgattacagaataa |
44843208 |
T |
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