View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_high_5 (Length: 574)
Name: NF17493_high_5
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 25 - 567
Target Start/End: Complemental strand, 45513107 - 45512556
Alignment:
| Q |
25 |
gaagctcatttgatgagagatcaagatagataagagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtga |
124 |
Q |
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| T |
45513107 |
gaagctcatttgatgagagatcaagatagataagagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtga |
45513008 |
T |
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| Q |
125 |
aagatttaataaagaaggaagtgtattgagtacctggaacaagttgcgcttgtcattgagacgaataccactcaagtcaaggtgtttgagtgagtgaagg |
224 |
Q |
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| T |
45513007 |
aagatttaataaagaaggaagtgtattgagtacctggaacaagttgcgcgtgtcattgagacgaataccactcaagtcaaggtgtttgagtgagtgaagg |
45512908 |
T |
|
| Q |
225 |
tttgaaatccaactggtgtcgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaattgtaggttct |
324 |
Q |
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| T |
45512907 |
tttgaaatccaactggtgccgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaatcgtaggttct |
45512808 |
T |
|
| Q |
325 |
tgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccatggaacccaagaacataggaattgg |
424 |
Q |
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| T |
45512807 |
tgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccatggaacccaagaacataggaattgg |
45512708 |
T |
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| Q |
425 |
actcccactgaaattatttctagacaagtccaaataagtcaagtgttccaattgcaacaaagatgagctcacatttggagcaactattggtgaacaaggc |
524 |
Q |
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| T |
45512707 |
actcccactgaaattatttccagacaagtccaaataagtcaagtgttccaattgcaacaaagatgagctcacatttggagcaactattggtgaacaaggc |
45512608 |
T |
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| Q |
525 |
atgtaatcgtcc---------aaatagtagtgaccaaaatgttcttcttctc |
567 |
Q |
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| T |
45512607 |
atgtaatcgtccaaattgtacaaatagtagtgaccaaaatgttcttcttctc |
45512556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 370 - 501
Target Start/End: Original strand, 22848797 - 22848928
Alignment:
| Q |
370 |
gagacagagagagatactcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttctagacaagtccaaataagtcaagtg |
469 |
Q |
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|||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||||| | |||||| ||||| || |||||||||||||||||||| |
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| T |
22848797 |
gagagagagagagatactcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagtccaaataagtcaagta |
22848896 |
T |
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| Q |
470 |
ttccaattgcaacaaagatgagctcacatttg |
501 |
Q |
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| T |
22848897 |
ttccaagtgcaacaaagatgagctcagatttg |
22848928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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