View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_high_7 (Length: 530)
Name: NF17493_high_7
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 9471240 - 9470726
Alignment:
| Q |
1 |
ctgtacatattcttaccttttggctaagattttgagtgtttggggcaatttgaatagggaactaccaaaaagtcaaacttggcgaattcaagttcaaatg |
100 |
Q |
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| T |
9471240 |
ctgtacatattcttaccttttgactaagattttgagtgtttgggtcaatttgaatagggaactaccaaaaagtcaaacttggcgaattcaagttcaaatg |
9471141 |
T |
|
| Q |
101 |
gattgggagatttcatatttgttgatgatgaacacaagccagtggaggatcagccagtgccaatggctttagagcaaacagaaccaatgcatagcgaatc |
200 |
Q |
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| T |
9471140 |
gatttggagatttcatatttgttgatgatgaacacaagccagtggaggatcagccagtgccaatggctttagagcaaacagaaccaatgcatagcgaatc |
9471041 |
T |
|
| Q |
201 |
ggatcggatggtaattctttaatgtcttgtttatttaattcgttaataagttcatattttaaatcatttttcaaattttagttgttgactgcaaataatt |
300 |
Q |
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| T |
9471040 |
cgatcggatggtaattctttaatgtcttgtttatttaattcgttaataagttcatattttaaatcatttttcaaattttagttgttgactgcaaataatt |
9470941 |
T |
|
| Q |
301 |
ggtcttaaataggaggaagttgagatggaggatatcatggaagagcttgttatggacattgacacccctgatgcaaatgaccctcttgcagttgctgaat |
400 |
Q |
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| T |
9470940 |
ggtcttaaataggaggaagttgagatggaggatatcatggaagagcctgttatggacattgacacccctgatgcaaatgaccctcttgcagttgctgaat |
9470841 |
T |
|
| Q |
401 |
atattgaagatctttattcttactacagaaaagttgaggtacatttggaatctatattttacaacacttctctgatcatttggattttatttaaaaatgg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9470840 |
atattgaagatctttattcttactacagaaaagttgaggtacatttggaatcaatattttacaacacttctctgatcatttggattttatttaaaaatgg |
9470741 |
T |
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| Q |
501 |
gatatatgaagcaat |
515 |
Q |
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| T |
9470740 |
gatatatgaagcaat |
9470726 |
T |
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