View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_high_8 (Length: 471)
Name: NF17493_high_8
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 2 - 316
Target Start/End: Original strand, 12908643 - 12908957
Alignment:
| Q |
2 |
atagaattattttagctaccttgtcgcgacttcttccgctaattattgctgttgggaaatactctgccacctttttaacagcagcacgcatctgcagagc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12908643 |
atagaattattttagctaccttgtcgcgacttcttccgctaattattgctgttgggaaatactctgccacctttttaacagcagcacgcatctgcagagc |
12908742 |
T |
|
| Q |
102 |
ttaccagatcagaatcagagtaggaagaatagaaattagacagcaaaatggaggagaatatcacacatacattgtccgacatgaaagcacagtctggatt |
201 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12908743 |
ttaccagatcagaatcagagtaggaagaatacaaattagacagcaaaatggaggagaatatcacacatacattgtccgacatgaaagcacagtctggatt |
12908842 |
T |
|
| Q |
202 |
atccacaattggtgaaagagttccatcgtagtccaaaaataatgcaattcttttgccttttgcgaagtttgttatttgatcaaaagatgcaagtgccgat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
12908843 |
atccacaattggtgaaagagttccatcgtagtccaaaaataatgcaattcttttgccttttgcaaagtttgttatttgatcaaaagatgcaagtgctgat |
12908942 |
T |
|
| Q |
302 |
ggatattttagctgc |
316 |
Q |
| |
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||||||||||||||| |
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| T |
12908943 |
ggatattttagctgc |
12908957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 2 - 316
Target Start/End: Complemental strand, 13309669 - 13309351
Alignment:
| Q |
2 |
atagaattattttagctaccttgtcgcgacttcttccgctaattattgctgttgggaaatactctgccacctttttaacagcagcacgcatctgcagagc |
101 |
Q |
| |
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|||||||| ||||| |||||||||| ||||||||| | | |||||| ||||| ||||||||||| ||||||||||||||||||| |||||||||| | |
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| T |
13309669 |
atagaatt-ttttaactaccttgtcacgacttcttagacaagttattgttgttgtaaaatactctgcgacctttttaacagcagcacacatctgcagacc |
13309571 |
T |
|
| Q |
102 |
ttaccagatcagaatcagagtaggaagaatagaaattagacagcaaaatggaggagaatatc--acacatacattgtccgacatgaaagcacagtctgga |
199 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| | | |
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| T |
13309570 |
ttaccagatcagaatcattgtaggaagaatagaaattagacactaaaatggagtagaatatctcacacatacattgtccgacatgaaagcacagtcagaa |
13309471 |
T |
|
| Q |
200 |
ttatccacaattggtgaaagagttccatcgtagtccaaaaataatgcaattcttttgccttttgcgaagtttgttatttgatcaaaagatgcaagtgcc- |
298 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||||||| | ||||||| ||||||||||| ||||||| | ||||||||||||||||||||| | |
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| T |
13309470 |
ttatccacaattggtgaaaaagttccatcatagtccaaaagcagtgcaattattttgccttttacgaagttcctaatttgatcaaaagatgcaagttctc |
13309371 |
T |
|
| Q |
299 |
--gatggatattttagctgc |
316 |
Q |
| |
|
|||||||||||||||||| |
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| T |
13309370 |
ctgatggatattttagctgc |
13309351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 44 - 296
Target Start/End: Complemental strand, 13311525 - 13311271
Alignment:
| Q |
44 |
ttattgctgttgggaaatactctgccacctttttaacagcagcacgcatctgcagagcttaccagatcagaatcagagtaggaagaatagaaattagaca |
143 |
Q |
| |
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|||||| ||||| |||||||||||||||| || ||||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||| ||||||||| |
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| T |
13311525 |
ttattgttgttgaaaaatactctgccacctcttaaacagcagcacacatctgcagaccttactaaatcagaatcagtgtaggaagaatagtaattagaca |
13311426 |
T |
|
| Q |
144 |
gcaaaatggaggagaatatca--cacatacattgtccgacatgaaagcacagtctggattatccacaattggtgaaagagttccatcgtagtccaaaaat |
241 |
Q |
| |
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| |||||||| |||||||||| ||||| |||||||| |||||||||||||||| || ||||||||||| ||||||| |||||||| |||||||||| |
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| T |
13311425 |
gtaaaatggaagagaatatcacacacatgcattgtccaacatgaaagcacagtcagggttatccacaatgggtgaaaatgttccatcatagtccaaaagc |
13311326 |
T |
|
| Q |
242 |
aatgcaattcttttgccttttgcgaagtttgttatttgatcaaaagatgcaagtg |
296 |
Q |
| |
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| |||||| ||||||| ||| ||||||| | |||||||||||| ||| ||||| |
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| T |
13311325 |
agggcaattattttgccctttacgaagttcctaatttgatcaaaaaatgtaagtg |
13311271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 370 - 455
Target Start/End: Original strand, 12909011 - 12909096
Alignment:
| Q |
370 |
tgcagaactcagatactagttgaaataagggagtatgtattaccagccagttaaagtaaggatcagattcggatgatgcaaaacct |
455 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12909011 |
tgcagaactcagatagtaattgaaataagggagtatgtattaccagccagttaaagtaaggatcagattcagatgatgcaaaacct |
12909096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 13309300 - 13309225
Alignment:
| Q |
370 |
tgcagaactcagatactagttgaaataagggagtatgtattaccagccagttaaagtaaggatcagattcggatgat |
446 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||||| || |||||||||||| |||||||||||| ||| |||||| |
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| T |
13309300 |
tgcagaactcggatactaattgaaataggggagtattgat-accagccagttagagtaaggatcagtttcagatgat |
13309225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 41979035 - 41978982
Alignment:
| Q |
18 |
taccttgtcgcgacttcttccgctaattattgctgttgggaaatactctgccac |
71 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| || |||||| ||| |||||| |
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| T |
41979035 |
taccttgtcgcgacttcttccactaatgattgccgtagggaaacactttgccac |
41978982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 43100534 - 43100246
Alignment:
| Q |
11 |
ttttagctaccttgtcgcgacttcttccgctaattattgctgttgggaaatactctgccacctttttaacagcagcacgcatctgcagagcttaccagat |
110 |
Q |
| |
|
||||| |||||||||| |||||||| | | |||||| |||||| ||||||||||| |||||||||||||||||| |||||||||| |||||||||| |
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| T |
43100534 |
ttttaactaccttgtcatgacttcttagacaagttattgttgttggaaaatactctgcggcctttttaacagcagcacacatctgcagaccttaccagat |
43100435 |
T |
|
| Q |
111 |
cagaatcagagtaggaagaatagaaattagacagcaaaatggaggagaatatcacaca--tacattgtccgacatgaaagcacagtctggattatccaca |
208 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
43100434 |
cagaataattataggaagaatagaaattagacagtaaaattgagtagaatatcacacacatacattgtccgacatgaaagcacagtaaggattaaccaca |
43100335 |
T |
|
| Q |
209 |
attggtgaaagagttccatcgtagtccaaaaataatgcaattcttttgccttttgcgaagtttgttatttgatcaaaagatgcaagtgc |
297 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| | ||||||| ||||||||||||| ||||| | ||||||||||||| || |||||| |
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|
| T |
43100334 |
attggtgaaaaagttccatcatagtccaaaagcagtgcaattattttgccttttgcaaagttcctaatttgatcaaaagttgtaagtgc |
43100246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 1565698 - 1565594
Alignment:
| Q |
15 |
agctaccttgtcgcgacttcttccgctaattattgctgttgggaaatactctgccacctttttaacagcagcacgcatctgcagagcttaccagatcaga |
114 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||||||||| |||| ||||||| |
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| T |
1565698 |
agctaccttttcacgacttcttccgctaattattgcagttggaaaatattctgccacatttttcaccgcagcacgcatctgcagatgttacatgatcaga |
1565599 |
T |
|
| Q |
115 |
atcag |
119 |
Q |
| |
|
||||| |
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|
| T |
1565598 |
atcag |
1565594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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