View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_high_9 (Length: 454)
Name: NF17493_high_9
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Complemental strand, 39246984 - 39246559
Alignment:
| Q |
15 |
tatgtatattcttcgatagatcagaaactaatttgtaaaaaagcacatgatgactaacaacattgcttttttctctagtgaaggggtggcgttggagagt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39246984 |
tatgtatattcttcgatagatcagaaactaatttgtgaaaaagcacatgatgactaacaacattgcttttttctctagtgaaggggtggggttggagagt |
39246885 |
T |
|
| Q |
115 |
acgagcttgcaatgtcatgaacaagaaggtggtgaagattattagcgcaaatatagttatttgtgtgtttgccatgtgaatgtgataaacttgatttgaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39246884 |
acgagcttgcaatgtcatgaacaagaaggtggtgaagattattagcgcaaatatagttatttgtgtgtttgccatgtgaatgtgataaacttgatttgaa |
39246785 |
T |
|
| Q |
215 |
ttagttggacaatgtgctgtaaagtgggagctactatgcttgatgagcttgaatgtgtagtggtatttgaggattttaatgtcgactcttgaagctgact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39246784 |
ttagttggacaatgtgctgtaaagtgggagctactatgcttgatgagcttgaatgtgtagtggtatttgaggattttaatgtcgactcttgaagctgact |
39246685 |
T |
|
| Q |
315 |
aaaaccactatttatattatagaacaaattcatgaaacagaaagtgctatataactaaataagtgggatatatcaaatctaaaaagctttaatggttatg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39246684 |
aaaaccactatttatattatagaacaaattcatgaaacagaaagtgctatataactaaataagtgggatatatcaaatctaaaaagctttaatgattatg |
39246585 |
T |
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| Q |
415 |
tgaaactatatacacacacataaact |
440 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39246584 |
tgaaactatatacacacacataaact |
39246559 |
T |
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