View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17493_low_10 (Length: 423)

Name: NF17493_low_10
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17493_low_10
NF17493_low_10
[»] chr7 (5 HSPs)
chr7 (19-419)||(7969291-7969691)
chr7 (238-421)||(37577632-37577813)
chr7 (22-87)||(37577424-37577493)
chr7 (345-414)||(32895222-32895287)
chr7 (166-206)||(37577563-37577603)
[»] chr5 (14 HSPs)
chr5 (147-326)||(25477748-25477924)
chr5 (240-418)||(32651223-32651398)
chr5 (239-326)||(32710668-32710755)
chr5 (240-326)||(32557359-32557445)
chr5 (311-414)||(32740594-32740694)
chr5 (240-354)||(32768424-32768538)
chr5 (259-338)||(32763443-32763522)
chr5 (163-206)||(32858859-32858902)
chr5 (109-206)||(32763293-32763390)
chr5 (281-415)||(25469920-25470051)
chr5 (21-92)||(32651534-32651609)
chr5 (164-206)||(32655694-32655736)
chr5 (163-208)||(25469805-25469850)
chr5 (52-92)||(25477662-25477702)
[»] chr1 (1 HSPs)
chr1 (239-317)||(17583916-17583994)


Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 7969691 - 7969291
Alignment:
Q  19 tgtccctgttgtgctgtaataaattttgcaattttgttttctttatgttgtttttatcattgattaatgcgttgagccattgacaattgatggtgcagat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7969691 tgtccctgttgtgctgtaataaattttgcaattttgttttctttatgttgtttttatcattgattaatgcgttgagccattgacaattgatggtgcagat 7969592  T
Q  119 gcaaatctacgtgatgacccaaactggaaaggtgatccccataggggttaagagttcagacacaatagtcaatgtgaaggagaagattttcgaaaagaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  7969591 gcaaatctacgtgatgacccaaactggaaaggtgatccccataggggttaagagttcagacacaataggcaatgtgaaggagaagattttcgacaagaat 7969492  T
Q  219 aaagattaccaagtacacttgcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccc 318  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7969491 aaagattaccaagtacacgtgcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccc 7969392  T
Q  319 tccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  7969391 tccacctcgtcagccgcctcatcggagactagatgaccactgcgccatcatcaccaattactaaatccaaaagcaggcaatcatccacctcatcatctgc 7969292  T
Q  419 c 419  Q
    |    
T  7969291 c 7969291  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 421
Target Start/End: Original strand, 37577632 - 37577813
Alignment:
Q  238 tgcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcct 337  Q
    |||||||||||||||||||| ||||| || ||||| | ||||||||| ||||||||| | |||||||||||| |||||||||| |  |||||  |||| |    
T  37577632 tgcaacgtctgatctttgccggtaaggaactagataatagcctgacccttgccaattaccacatccaagagaagtcaaccctcaaattcgtcctccgcat 37577731  T
Q  338 catcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgc 421  Q
    ||| || || ||||||||| | |||| |||  | ||||||| || ||||||||||| |||| | ||||||||||  ||||||||    
T  37577732 catgggggattagatgacctccgcacaatc--ccccgattaatacatccaagagcatgcaaccgtccacctcattgtctgccgc 37577813  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 37577424 - 37577493
Alignment:
Q  22 ccctgttgtgctgtaataaattttgcaa----ttttgttttctttatgttgtttttatcattgattaatg 87  Q
    ||||||||||||||||||||||||||||    ||||||||||||| ||||| |||| |||| ||||||||    
T  37577424 ccctgttgtgctgtaataaattttgcaatgggttttgttttctttctgttgcttttgtcatggattaatg 37577493  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 32895222 - 32895287
Alignment:
Q  345 gactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcat 414  Q
    |||||||||||||||||    |||||||| ||||||| |||||||||||||||| ||||||||| |||||    
T  32895222 gactagatgaccactgcg---tcatcacc-attactacatccaagagcaggcaaccatccaccttatcat 32895287  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 37577563 - 37577603
Alignment:
Q  166 ttaagagttcagacacaatagtcaatgtgaaggagaagatt 206  Q
    |||||||||||||||| |||| | |||||||||||||||||    
T  37577563 ttaagagttcagacacgatagccgatgtgaaggagaagatt 37577603  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 326
Target Start/End: Original strand, 25477748 - 25477924
Alignment:
Q  147 aaggtgatccccataggggttaagagttcagacacaatagtcaatgtgaaggagaagattttcgaaaagaataaagattaccaagtacacttgcaacgtc 246  Q
    |||||||||||| |  ||||||||||||||||||| |||| || |||||||||||||||||| || ||| | ||||  ||||||||  ||   |||||||    
T  25477748 aaggtgatccccttgagggttaagagttcagacacgatagacagtgtgaaggagaagatttttgacaagga-aaag--taccaagtgaacgatcaacgtc 25477844  T
Q  247 tgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 326  Q
    |||| ||| || |||||||| |||| ||| ||| |||||||||||||| |||||||||||||| ||||||| ||||||||    
T  25477845 tgatattttccggtaagcaactagacgactgccagaccattgccaattacaacatccaagagaagtcaaccatccacctc 25477924  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 418
Target Start/End: Complemental strand, 32651398 - 32651223
Alignment:
Q  240 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctca 339  Q
    |||||| ||||||||||  |||| ||| |||| ||| ||| || | ||||| ||| || ||||||||| | ||||||| | |||||| |   |||  |||    
T  32651398 caacgtttgatctttgctggtaaacaactagaggacggccggatccttgccgattacatcatccaagataagtcaaccattcacctcattctccgtgtca 32651299  T
Q  340 tcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgc 418  Q
    |||| |||||||||||||||||||||||    |||||||||| ||||||||| || ||| | |||||||||||||||||    
T  32651298 tcggggactagatgaccactgcaccatcg---ccgattactatatccaagagaagtcaaccgtccacctcatcatctgc 32651223  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 32710668 - 32710755
Alignment:
Q  239 gcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 326  Q
    |||| |||||||||||||||||||| || ||| |||| | | |||| ||||||||| |||||||||||||| |||||||||| |||||    
T  32710668 gcaatgtctgatctttgccagtaaggaactagctgactgtcagacccttgccaattacaacatccaagagaagtcaaccctcaacctc 32710755  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 32557445 - 32557359
Alignment:
Q  240 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 326  Q
    ||||||||||| ||||||| ||||| | ||||||||||||  ||| ||||| ||| |||||||||||||| | ||||||||||||||    
T  32557445 caacgtctgatgtttgccaataagctactagatgacagccatacccttgcctattacaacatccaagagaaggcaaccctccacctc 32557359  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 32740594 - 32740694
Alignment:
Q  311 gtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctca 410  Q
    |||||||||||||||||||  ||||||| | ||||||||||||||||   || || ||||||||||||||| |||||||||  ||||||  ||||||| |    
T  32740594 gtcaaccctccacctcgtcctccgcctccttggagactagatgacca---caacaccatcaccgattactacatccaagagttggcaattgtccacctta 32740690  T
Q  411 tcat 414  Q
    ||||    
T  32740691 tcat 32740694  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 354
Target Start/End: Original strand, 32768424 - 32768538
Alignment:
Q  240 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctca 339  Q
    |||||| |||| |||||| ||| ||||  |||||||| |  |||| |||||||||||||||||||||||| ||||| ||| ||| |||||| |||||| |    
T  32768424 caacgtttgatatttgccggtaggcaacgagatgacaacgagacccttgccaattgcaacatccaagagaagtcaatcctgcacgtcgtcatccgcctta 32768523  T
Q  340 tcggagactagatga 354  Q
      || ||||||||||    
T  32768524 ctggggactagatga 32768538  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 32763443 - 32763522
Alignment:
Q  259 gtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctc 338  Q
    ||||||| ||||| |||| ||| ||| ||||||||| ||||||||||||||  |||||| |||||||| ||| |||||||    
T  32763443 gtaagcagttagaggacaaccttacccttgccaattacaacatccaagagaattcaaccatccacctcctcatccgcctc 32763522  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 32858859 - 32858902
Alignment:
Q  163 gggttaagagttcagacacaatagtcaatgtgaaggagaagatt 206  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||    
T  32858859 gggttaagagttcagacacgatagtcaatgtgaaggagatgatt 32858902  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 32763293 - 32763390
Alignment:
Q  109 tggtgcagatgcaaatctacgtgatgacccaaactggaaaggtgatccccataggggttaagagttcagacacaatagtcaatgtgaaggagaagatt 206  Q
    |||||||||||||||||||||| |    ||  ||||||||| |||||||| |  ||||| ||||||||||||||||||  ||||||||| | ||||||    
T  32763293 tggtgcagatgcaaatctacgtaaaagacctgactggaaagatgatccccttgagggttgagagttcagacacaatagaaaatgtgaagaaaaagatt 32763390  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 415
Target Start/End: Original strand, 25469920 - 25470051
Alignment:
Q  281 gaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattact 380  Q
    |||||||||||||||||||||| |||||| |||| || ||  |||||||   |||||||| || ||||||| ||| ||   ||||||      |||||||    
T  25469920 gaccattgccaattgcaacatcgaagagaagtcagccatcttcctcgtctttcgcctcatgggcgactagacgacaaccaaaccatcggt---gattact 25470016  T
Q  381 aaatccaagagcaggcaatcatccacctcatcatc 415  Q
    | |||||||||||||||| |||| |||||||||||    
T  25470017 acatccaagagcaggcaaccatcaacctcatcatc 25470051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 32651609 - 32651534
Alignment:
Q  21 tccctgttgtgctgtaataaattttgcaa----ttttgttttctttatgttgtttttatcattgattaatgcgttg 92  Q
    |||||||||| | || |||||||||||||    ||||||||||||||||||| ||| |||||||||| ||| ||||    
T  32651609 tccctgttgtaccgtcataaattttgcaaggggttttgttttctttatgttgctttaatcattgattgatgtgttg 32651534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 32655736 - 32655694
Alignment:
Q  164 ggttaagagttcagacacaatagtcaatgtgaaggagaagatt 206  Q
    |||||||||||||||||||||| || |||||||| ||||||||    
T  32655736 ggttaagagttcagacacaatactcgatgtgaagaagaagatt 32655694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 25469805 - 25469850
Alignment:
Q  163 gggttaagagttcagacacaatagtcaatgtgaaggagaagatttt 208  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||    
T  25469805 gggttaagagttcagacacgatatacagtgtgaaggagaagatttt 25469850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 25477662 - 25477702
Alignment:
Q  52 ttgttttctttatgttgtttttatcattgattaatgcgttg 92  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  25477662 ttgttttctttctgttgcttttatcattgattaatgtgttg 25477702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 17583916 - 17583994
Alignment:
Q  239 gcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaacc 317  Q
    ||||||||||||||||| | |||||||| |||| |||| || |||| ||||| ||| |||||||||||||| |||||||    
T  17583916 gcaacgtctgatctttgacggtaagcaactagaggacaaccggacccttgccgattacaacatccaagagaagtcaacc 17583994  T

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