View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17493_low_11 (Length: 412)

Name: NF17493_low_11
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17493_low_11
NF17493_low_11
[»] chr1 (6 HSPs)
chr1 (11-73)||(25388354-25388416)
chr1 (16-62)||(3873903-3873949)
chr1 (18-70)||(28381534-28381586)
chr1 (15-74)||(27800813-27800872)
chr1 (18-71)||(30713395-30713448)
chr1 (11-71)||(9990619-9990680)
[»] chr2 (5 HSPs)
chr2 (17-74)||(37532790-37532847)
chr2 (16-74)||(1467576-1467634)
chr2 (18-75)||(36930756-36930813)
chr2 (18-70)||(13415254-13415306)
chr2 (16-70)||(27951935-27951989)
[»] chr8 (3 HSPs)
chr8 (18-70)||(39297990-39298042)
chr8 (35-71)||(9445394-9445430)
chr8 (31-75)||(26259754-26259798)
[»] chr6 (4 HSPs)
chr6 (19-75)||(33821005-33821061)
chr6 (15-70)||(11970453-11970508)
chr6 (24-70)||(28633770-28633816)
chr6 (18-75)||(15601895-15601952)
[»] chr5 (4 HSPs)
chr5 (18-73)||(28449274-28449329)
chr5 (18-75)||(33018937-33018994)
chr5 (18-70)||(35836780-35836832)
chr5 (30-75)||(22100362-22100407)
[»] chr4 (3 HSPs)
chr4 (18-70)||(17874467-17874519)
chr4 (18-71)||(50016067-50016120)
chr4 (16-67)||(43128100-43128151)
[»] chr7 (4 HSPs)
chr7 (18-75)||(6344152-6344209)
chr7 (14-69)||(29937142-29937197)
chr7 (18-71)||(2317478-2317531)
chr7 (337-370)||(3700872-3700905)
[»] scaffold0024 (1 HSPs)
scaffold0024 (35-71)||(87717-87753)
[»] chr3 (4 HSPs)
chr3 (16-55)||(6985471-6985510)
chr3 (16-55)||(8129520-8129559)
chr3 (24-75)||(8440927-8440978)
chr3 (30-75)||(25783087-25783132)
[»] scaffold0036 (1 HSPs)
scaffold0036 (16-70)||(45325-45379)


Alignment Details
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 25388354 - 25388416
Alignment:
Q  11 cacagaatacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaat 73  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||    
T  25388354 cacagaatacaacaagtggctagccaatgtctaaacacgacaaaggactcgaccaccacaaat 25388416  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 3873903 - 3873949
Alignment:
Q  16 aatacaacaagtggttagccaatgcctaaacacgacaatgaactcga 62  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  3873903 aatacaacaagtggttagtcaatgcctaaacacgacaatggactcga 3873949  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 28381534 - 28381586
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccaca 70  Q
    ||||||||||||||| |||||||||||||||||||||| | ||||| ||||||    
T  28381534 tacaacaagtggttaaccaatgcctaaacacgacaatggattcgacaaccaca 28381586  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 27800813 - 27800872
Alignment:
Q  15 gaatacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaatg 74  Q
    ||||||||||||||| ||| ||||||||||| | ||||| | ||||||||||||||||||    
T  27800813 gaatacaacaagtggctagtcaatgcctaaataggacaaaggactcgaccaccacaaatg 27800872  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 30713448 - 30713395
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatga-actcgaccaccacaa 71  Q
    ||||| ||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  30713448 tacaagaagtggttatccaatgcctaaacacgac-atgagactcgaccaccacaa 30713395  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 9990619 - 9990680
Alignment:
Q  11 cacagaatacaacaagtggt-tagccaatgcctaaacacgacaatgaactcgaccaccacaa 71  Q
    ||||||||||||||| | || ||  ||||||||||||||||||||| |||||| ||||||||    
T  9990619 cacagaatacaacaaatagtctacacaatgcctaaacacgacaatggactcgatcaccacaa 9990680  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 37532847 - 37532790
Alignment:
Q  17 atacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaatg 74  Q
    |||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  37532847 atacaaaatgtggttagtcaatgcctagacacgacaatgaactcgaccaccacaaatg 37532790  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 1467576 - 1467634
Alignment:
Q  16 aatacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaatg 74  Q
    ||||||||||| ||| ||||||||| |||||||||||| || |||||||||||||||||    
T  1467576 aatacaacaagaggtcagccaatgcataaacacgacaaagagctcgaccaccacaaatg 1467634  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 36930756 - 36930813
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaatga 75  Q
    ||||| ||||||||| |||||||||||||||||||  |  ||||||||||||||||||    
T  36930756 tacaagaagtggttaaccaatgcctaaacacgacatagggctcgaccaccacaaatga 36930813  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 13415254 - 13415306
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccaca 70  Q
    |||||||||| |||| |||||||||||||||||||||| | ||||| ||||||    
T  13415254 tacaacaagttgttaaccaatgcctaaacacgacaatggattcgacaaccaca 13415306  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 27951989 - 27951935
Alignment:
Q  16 aatacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccaca 70  Q
    |||||||||||| || | |||||||||||||||||||||| | ||||| ||||||    
T  27951989 aatacaacaagttgtcaaccaatgcctaaacacgacaatggattcgacaaccaca 27951935  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 39298042 - 39297990
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccaca 70  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  39298042 tacaacaagtggttaaccaatgcctaaacacgacaatgaattcgacaaccaca 39297990  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 9445430 - 9445394
Alignment:
Q  35 caatgcctaaacacgacaatgaactcgaccaccacaa 71  Q
    ||||||||||||||||||||| |||||||||||||||    
T  9445430 caatgcctaaacacgacaatggactcgaccaccacaa 9445394  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 26259754 - 26259798
Alignment:
Q  31 tagccaatgcctaaacacgacaatgaactcgaccaccacaaatga 75  Q
    ||||||||||||||||||||||| || |||  |||||||||||||    
T  26259754 tagccaatgcctaaacacgacaaagagctcatccaccacaaatga 26259798  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 33821005 - 33821061
Alignment:
Q  19 acaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaatga 75  Q
    |||| |||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  33821005 acaagaagtagttaaccaatgcctaaacacgacaatgaactcaaccaccacaaatga 33821061  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 11970508 - 11970453
Alignment:
Q  15 gaatacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccaca 70  Q
    ||||||||||||||| ||||| ||| ||||| ||||||||| ||||||||||||||    
T  11970508 gaatacaacaagtggctagcctatgtctaaatacgacaatggactcgaccaccaca 11970453  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 28633816 - 28633770
Alignment:
Q  24 aagtggttagccaatgcctaaacacgacaatgaactcgaccaccaca 70  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||||    
T  28633816 aagtggttaaccaatgcctaaacacgacaatggactcaaccaccaca 28633770  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 15601895 - 15601952
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaatga 75  Q
    ||||| ||||||||| |||||||||||||||||||  |  ||||||||||||||||||    
T  15601895 tacaagaagtggttaaccaatgcctaaacacgacatggggctcgaccaccacaaatga 15601952  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 28449329 - 28449274
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaat 73  Q
    ||||| |||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  28449329 tacaaaaagtggttagtcaatgcctaaacacgacaatgggctcgaccaccacaaat 28449274  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 33018994 - 33018937
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaatga 75  Q
    ||||| ||||||||| |||||||||||||||||||  || ||||||||||||||||||    
T  33018994 tacaagaagtggttaaccaatgcctaaacacgacatggagctcgaccaccacaaatga 33018937  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 35836780 - 35836832
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccaca 70  Q
    ||||||||||||||| ||||||||||| |||||||||| | ||||| ||||||    
T  35836780 tacaacaagtggttaaccaatgcctaagcacgacaatggattcgacaaccaca 35836832  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 22100407 - 22100362
Alignment:
Q  30 ttagccaatgcctaaacacgacaatgaactcgaccaccacaaatga 75  Q
    |||||||||||||||||||||||| | ||||  |||||||||||||    
T  22100407 ttagccaatgcctaaacacgacaaaggactcatccaccacaaatga 22100362  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 17874467 - 17874519
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccaca 70  Q
    ||||||||||||||| |||||||||||||||||||||| | ||||| ||||||    
T  17874467 tacaacaagtggttaaccaatgcctaaacacgacaatggattcgacaaccaca 17874519  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 50016120 - 50016067
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaa 71  Q
    ||||| ||||||||| |||||||||||||||||||  | |||||||||||||||    
T  50016120 tacaagaagtggttaaccaatgcctaaacacgacatgggactcgaccaccacaa 50016067  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 43128151 - 43128100
Alignment:
Q  16 aatacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccacc 67  Q
    ||||||| |||||| ||||||||||||||| ||||||||  |||||||||||    
T  43128151 aatacaataagtggctagccaatgcctaaatacgacaatagactcgaccacc 43128100  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 6344209 - 6344152
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaatga 75  Q
    ||||| ||||||||| |||||||||||||||||||  |  ||||||||||||||||||    
T  6344209 tacaagaagtggttacccaatgcctaaacacgacatagggctcgaccaccacaaatga 6344152  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 29937197 - 29937142
Alignment:
Q  14 agaatacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccac 69  Q
    ||||||||||||||| ||||||||| ||||||||| ||||   |||||||||||||    
T  29937197 agaatacaacaagtgattagccaatacctaaacacaacaaatgactcgaccaccac 29937142  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 2317478 - 2317531
Alignment:
Q  18 tacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaa 71  Q
    ||||| |||||| || ||||||||||||||||||||   |||||||||||||||    
T  2317478 tacaagaagtggctaaccaatgcctaaacacgacaagagactcgaccaccacaa 2317531  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 370
Target Start/End: Complemental strand, 3700905 - 3700872
Alignment:
Q  337 atataggttgagtgattctttttctcagtgatta 370  Q
    ||||||||||||||||| ||||||||||||||||    
T  3700905 atataggttgagtgattatttttctcagtgatta 3700872  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 87753 - 87717
Alignment:
Q  35 caatgcctaaacacgacaatgaactcgaccaccacaa 71  Q
    ||||||||||||||||||||| |||||||||||||||    
T  87753 caatgcctaaacacgacaatggactcgaccaccacaa 87717  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 6985471 - 6985510
Alignment:
Q  16 aatacaacaagtggttagccaatgcctaaacacgacaatg 55  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  6985471 aatacaacaagttgttatccaatgcctaaacacgacaatg 6985510  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 8129520 - 8129559
Alignment:
Q  16 aatacaacaagtggttagccaatgcctaaacacgacaatg 55  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  8129520 aatacaacaagttgttaaccaatgcctaaacacgacaatg 8129559  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 8440978 - 8440927
Alignment:
Q  24 aagtggttagccaatgcctaaacacgacaatgaactcgaccaccacaaatga 75  Q
    ||||||||| |||||||||||||||||||  |  ||||||||||||||||||    
T  8440978 aagtggttaaccaatgcctaaacacgacatagggctcgaccaccacaaatga 8440927  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 25783087 - 25783132
Alignment:
Q  30 ttagccaatgcctaaacacgacaatgaactcgaccaccacaaatga 75  Q
    |||| ||||||||||||| ||||||| ||||| |||||||||||||    
T  25783087 ttagacaatgcctaaacatgacaatggactcgtccaccacaaatga 25783132  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 45379 - 45325
Alignment:
Q  16 aatacaacaagtggttagccaatgcctaaacacgacaatgaactcgaccaccaca 70  Q
    |||||||||||| || | |||||||||||||||||||||| | ||||| ||||||    
T  45379 aatacaacaagttgtcaaccaatgcctaaacacgacaatggattcgacaaccaca 45325  T

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