View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_low_13 (Length: 363)
Name: NF17493_low_13
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 51731015 - 51730671
Alignment:
| Q |
1 |
tactaaaatgaaagtctatcataatcatactaaaaattagaacatctaacaaacctgggtaccttcgaggcagatgagtaagaggcagctctccgtagac |
100 |
Q |
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| T |
51731015 |
tactaaaatgaaagtctatcataatcatactaaaaattagaacatctaacaaacctgggtaccttcgaggcagatgagtaagaggcagctctccgtagac |
51730916 |
T |
|
| Q |
101 |
tgacatgtacacttacatcaacaagtaccgcatgtaaagcatcaaaatgaacgggacaatacgaatgcaatcctaacagggctttaggaggaattcggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51730915 |
tgacatgtacacttacatcaacaagtaccgcatgtaaagcatcaaaatgaacgggacaatacgaatgcaatcctaacagagctttaggaggaattcggaa |
51730816 |
T |
|
| Q |
201 |
ttcatggatagcagccggagaagcatccagatcatccctgtggaatgtaagctccagtcagcgttacattttcaccaagcaaatgccaactaaaaaggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51730815 |
ttcatggatagcagccggagaagcatccagatcatccctgtggaatgtaagctccagtcagctttacattttcaccaagcaaatgccaactaaaaaggaa |
51730716 |
T |
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| Q |
301 |
ttaagcaggtttgtggatcatatgactcacccatcctcaagtgtc |
345 |
Q |
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| T |
51730715 |
ttaagcaggtttgtggatcatatgactcacccatcctcaagtgtc |
51730671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 353821 - 353655
Alignment:
| Q |
49 |
acaaacctgggtaccttcgaggcagatgagtaagaggcagctctccgtagactgacatgtacacttacatcaacaagtaccgcatgtaaagcatcaaaat |
148 |
Q |
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|||||||||||||||||| | ||||||| ||||| |||||||||| ||| |||| |||| ||||| ||||||||||| | ||||| ||||||||||||| |
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| T |
353821 |
acaaacctgggtaccttcaatgcagatgggtaaggggcagctctcagtaaactggcatgcacactgacatcaacaagagcagcatggaaagcatcaaaat |
353722 |
T |
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| Q |
149 |
gaacgggacaatacgaatgcaatcctaacagggctttaggaggaattcggaattcatggatagcagc |
215 |
Q |
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| || |||||||| ||||||| |||||| || ||||| ||||||||||| |||||||||| |||||| |
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| T |
353721 |
gtacaggacaatatgaatgcagtcctaaaagagctttgggaggaattcgaaattcatggacagcagc |
353655 |
T |
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