View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_low_14 (Length: 337)
Name: NF17493_low_14
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 8672481 - 8672743
Alignment:
| Q |
1 |
tatgaggcttttctcttcgttacatttaatcccacaagagaagttaccaacaagaagnnnnnnngaaatggcaaaataaagagtcaacaataaattcatt |
100 |
Q |
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| T |
8672481 |
tatgagacttttctcttcgttacatttaatcccacaagagaagttaccaacaagaagaaaaaaagaaatggcaaaataaagagtcaacaataaattcatt |
8672580 |
T |
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| Q |
101 |
tttacattatcattatatgttttgccaagcaattcattaacaaacacatgtatttccatcttcttttgcagtgcaaaatcattaataatcccttcataaa |
200 |
Q |
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| T |
8672581 |
tttacattatcattatatgttttgccaagcaattcattaacaaacacatgtatttccatcttcttttgcagtgcaaaatcattaataatcccttcataaa |
8672680 |
T |
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| Q |
201 |
gcaacatattaccttgttcttcaattattattatttttaacataaatctttctcctttgtaac |
263 |
Q |
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| T |
8672681 |
gcaacatattaccttgttcttcaattattattatttttaacacaaatctttctcctttgtaac |
8672743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 8673259 - 8673337
Alignment:
| Q |
256 |
tttgtaacaaacatactctcgagaagacattggtatagaagagtatagaggactaaatgtcgatattatcttaagtttttt |
336 |
Q |
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| T |
8673259 |
tttgtaacaaacatactc--gagaagacattggtatagaagagtattgaggactaaatgtcgatattatcttaagtttttt |
8673337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 8688982 - 8688910
Alignment:
| Q |
95 |
ttcatttttacattatcattatatgttttgccaagcaattcattaacaaacacatgtatttccatcttctttt |
167 |
Q |
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| T |
8688982 |
ttcatttttacgttatcattatatgttttgccaagcaattcattaacaaacacacgtatttccatcttctttt |
8688910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 8671691 - 8671649
Alignment:
| Q |
11 |
ttctcttcgttacatttaatcccacaagagaagttaccaacaa |
53 |
Q |
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| T |
8671691 |
ttctcttcgttacatataatcgcaaaagagaagttaccaacaa |
8671649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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