View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17493_low_18 (Length: 281)
Name: NF17493_low_18
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30055677 - 30055907
Alignment:
| Q |
1 |
tgttgagacttcatctgttgcnnnnnnncgcacgactgttgcaccggactattcatttactcctcaagtcctttgtggttgtgtgtattgcttagtggat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30055677 |
tgttgagacttcatctgttgctttttttcgcacgactgttgcaccggactattcattaacttctcaagtcctttgtggttgtgtgtattgcttagtggat |
30055776 |
T |
|
| Q |
101 |
ggttacatcaacggtatatacttctctacccccttccatttagtagatattgtaaaatcaaggacaacctcctgaggctttggagaagctatatataact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30055777 |
ggttacatcaacggtatatacttctctacccccttccatttagtagatattgtaaaaccaaggacaacctcctgaggcttaggagaagctatatataact |
30055876 |
T |
|
| Q |
201 |
cttttcaacatctgttattagttggaattaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30055877 |
cttttcaacatctgttattagttggaattaa |
30055907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 30681548 - 30681320
Alignment:
| Q |
1 |
tgttgagacttcatctgttgcnnnnnnncgcacgactgttgcaccggactattcatttactcctcaagtcctttgtggttgtgtgtattgcttagtggat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30681548 |
tgttgagacttcatctgttgctttttttcgcacgactgttgcaccggactattcattaactcctcaaatcctttgtggttgtgtgtattgcttagtggat |
30681449 |
T |
|
| Q |
101 |
ggttacatcaacggtatatacttctctacccccttccatttagtagatattgtaaaatcaaggacaacctcctgaggctttggagaagctatatataact |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30681448 |
ggttacatcaatggtatatacttctctacccccttccatttagtagatattgtaaaatcaaggacaacctcctgaggcttaggagaagctatatataact |
30681349 |
T |
|
| Q |
201 |
cttttcaacatctgttattagttggaatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30681348 |
cttttcaacatctgttattagttggaatt |
30681320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 30745449 - 30745657
Alignment:
| Q |
1 |
tgttgagacttcatctgttgcnnnnnnncgcacgactgttgcaccggactattcatttactcctcaagtcctttgtggttgtgtgtattgcttagtggat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30745449 |
tgttgagacttcatctgttgctttttttcgcacgactgttgcaccggactattcattaactcctcaagtcctttgtggttgtgtgtattgcttagtggat |
30745548 |
T |
|
| Q |
101 |
ggttacatcaacggtatatacttctctacccccttccatttagtagatattgtaaaatcaaggacaacctcctgaggctttggagaagctatatataact |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30745549 |
ggttacatcaatggtatatacttctctacccccttccatttagtagatattgtaaaatcaaggacaacctcctgaggcttaggagaagctatatataact |
30745648 |
T |
|
| Q |
201 |
cttttcaac |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
30745649 |
cttttcaac |
30745657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 30340816 - 30340727
Alignment:
| Q |
141 |
tagtagatattgtaaaatcaaggacaacctcctgaggctttggagaagctatatataactcttttcaacatctgttattagttggaattaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30340816 |
tagtagatattgtaaaatcaaggacaacctcctaaggcttaggagaagctatatataactc-tttcaacatctgttattagttggaattaa |
30340727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 30479381 - 30479470
Alignment:
| Q |
141 |
tagtagatattgtaaaatcaaggacaacctcctgaggctttggagaagctatatataactcttttcaacatctgttattagttggaattaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30479381 |
tagtagatattgtaaaatcaaggacaacctcctaaggcttaggagaagctatatataactc-tttcaacatctgttattagttggaattaa |
30479470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 30717545 - 30717456
Alignment:
| Q |
141 |
tagtagatattgtaaaatcaaggacaacctcctgaggctttggagaagctatatataactcttttcaacatctgttattagttggaattaa |
231 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30717545 |
tagtagatatcgtaaaatcaaggacagcctcctgaggcttaggcgaagctatatataactc-tttcaacatctgttattagttggaattaa |
30717456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 30478945 - 30479052
Alignment:
| Q |
35 |
actgttgcaccggactattcatttactcctcaagtcctttgtggt-tgtgtgtattgcttagtggatggttacatcaacggtatatacttctctaccccc |
133 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| ||| ||| ||||||||||| ||||||||| | |||||||| |||||||||||| |
|
|
| T |
30478945 |
actgttgcaccggactattcatt-actcctcaagtcctctgtggtgtgtttgtgttgcttagtgggtggttacatatatggtatatatttctctaccccc |
30479043 |
T |
|
| Q |
134 |
ttccattta |
142 |
Q |
| |
|
||||||||| |
|
|
| T |
30479044 |
ttccattta |
30479052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 29760004 - 29760094
Alignment:
| Q |
141 |
tagtagatattgtaaaatcaaggacaacctcctgaggctttggagaagc-tatatataactcttttcaacatctgttattagttggaattaa |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
29760004 |
tagttgatattgtaaaatcaaggacaacctcctgaggcttaggagaagcttatatataact-ttttcgatatctgttattagttggaattaa |
29760094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 20303490 - 20303438
Alignment:
| Q |
91 |
cttagtggatggttacatc-aacggtatatacttctctacccccttccattta |
142 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
20303490 |
cttagtgaatggttacatccaacggtatatatttctctacccccttctattta |
20303438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University