View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17493_low_2 (Length: 770)
Name: NF17493_low_2
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 663; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 20 - 759
Target Start/End: Original strand, 1346832 - 1347583
Alignment:
| Q |
20 |
gctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1346832 |
gctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttacaaggcttaaaacaagaatttgagct |
1346931 |
T |
|
| Q |
120 |
gattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtcatgaag |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346932 |
gattgaattttgcaaagatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtcatgaag |
1347031 |
T |
|
| Q |
220 |
aaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatatgcaagca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1347032 |
aaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatttgcaagca |
1347131 |
T |
|
| Q |
320 |
tccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1347132 |
tccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtg |
1347231 |
T |
|
| Q |
420 |
caaaggaaggtagaccgcaaaactaaagagggaaaaagttcagaggtagaactaactcaagcaatggaacaagaggtaatggctctgtgcaaaataaagc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1347232 |
caaaggaaggtagaccgcaaaactaaagagggcaaaagttcagaggtagaactaactcaagcaatggaactagaggtaatggctctgtgcaaaataaagc |
1347331 |
T |
|
| Q |
520 |
agtgtcatgaatgcaagaaatatggaca------------cagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgcatata |
607 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
1347332 |
agtgtcatgaatgcaagaaatatggacataatatatatatcagcaacaaattgttctattcaagcaacgtggttacgaaaaatgctaagcaaagcatata |
1347431 |
T |
|
| Q |
608 |
tcgcgtagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagtagcagg |
707 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1347432 |
tcgcgtagttattaagtgtaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagtagcagg |
1347531 |
T |
|
| Q |
708 |
tatagaaaattaagaaaaaaccaagtatacatctaggaaatattcatctcac |
759 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
1347532 |
tatagaaaattaagaaaacaccaagtatatatctaggaaatattcatatcac |
1347583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 323 - 435
Target Start/End: Complemental strand, 8675916 - 8675805
Alignment:
| Q |
323 |
ttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaa |
422 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||| ||||||||||||||| | ||| || || |||||||||||| ||||||||| ||||||||||| || |
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|
| T |
8675916 |
ttggagtcgcatgaaatgttaatgagtgaaagg-tcaagtgacacaatcgaacaaacatttacagctccaacaaatctgacaaataagggatttgtgtaa |
8675818 |
T |
|
| Q |
423 |
aggaaggtagacc |
435 |
Q |
| |
|
||||||||||||| |
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|
| T |
8675817 |
aggaaggtagacc |
8675805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 209 - 380
Target Start/End: Complemental strand, 19807748 - 19807579
Alignment:
| Q |
209 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
308 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||| ||||||||| | | || ||||| ||||| |
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|
| T |
19807748 |
aagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcattagcagcaattgaagagtc-aaaagatctgaacacagcgacctagaatg |
19807650 |
T |
|
| Q |
309 |
atatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
380 |
Q |
| |
|
|| ||||| || ||||| ||||||||||||||| ||| | |||| |||||||||||||||| |||||||| |
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|
| T |
19807649 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagtgaaa-agtcaagtgacacaatcgatcaagca |
19807579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 577 - 693
Target Start/End: Complemental strand, 8675798 - 8675681
Alignment:
| Q |
577 |
tggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacc-attgatttgtataaggagacaaaacctata |
675 |
Q |
| |
|
||||||| |||||||||||||| ||||||| || ||||||| |||||||||||||||||| |||| ||||||||||||||||||| || ||| || |
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|
| T |
8675798 |
tggttacagaaaatgctaagcaaaacatatattgcatagttatcaagtgcaccctagaattggaagaccgtttgatttgtataaggagaccaagcctgta |
8675699 |
T |
|
| Q |
676 |
cttttcaaaccatcaaat |
693 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
8675698 |
ttgttcaaaccgtcaaat |
8675681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 9619623 - 9619569
Alignment:
| Q |
385 |
aagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
439 |
Q |
| |
|
|||||||| |||| ||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
9619623 |
aagctccagcaaatctgacaaataagtgatttgtgcaaaggagggtagaccgcaa |
9619569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 8e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 40036956 - 40036781
Alignment:
| Q |
20 |
gctataacaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagc |
118 |
Q |
| |
|
|||||||||| ||| |||| ||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
40036956 |
gctataacaataaaacaagcttgggaaattatgctcaaaacacatggagcaaatccaatttaacgaaaaaggttgcaagacttaaaacaacaatttgagc |
40036857 |
T |
|
| Q |
119 |
tgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataa |
194 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||| || | |||||||| |
|
|
| T |
40036856 |
tgattgaattttacaaagatgaaagcattcatgattttttacgaatggatatgttggtcaataaaaccaagaataa |
40036781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 30 - 282
Target Start/End: Complemental strand, 40031602 - 40031340
Alignment:
| Q |
30 |
caaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagctgattgaatt |
128 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||| |||| ||||| ||||| ||||||||||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
40031602 |
caaagcaagcttgggaaattatgctcaaaacacatggagcaaatccagtttaaagaaaaaggttgcaagacttaaaacaacaatttgagcttattgaatt |
40031503 |
T |
|
| Q |
129 |
ttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaa---------taatataacagaaaaacaagtcatgaag |
219 |
Q |
| |
|
|| |||| || ||| ||||| ||||||||||| ||| ||||| ||||||||| || ||||||| ||||| ||||||||||||||||||| || |
|
|
| T |
40031502 |
ttacaaagataaaaatattcctgattttttacaaatagatacattggtcaataaaccgaagaataacaatggtaatacaacagaaaaacaagtcatggag |
40031403 |
T |
|
| Q |
220 |
aaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaa |
282 |
Q |
| |
|
|| ||| || | |||||| | |||||| ||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
40031402 |
aagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaa |
40031340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 613 - 684
Target Start/End: Complemental strand, 15785176 - 15785105
Alignment:
| Q |
613 |
tagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaa |
684 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||| | |||||| |
|
|
| T |
15785176 |
tagttatcaagtgcaccctagaattggtggaccattaattggtataaggagaccaaacctatattgttcaaa |
15785105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 326 - 469
Target Start/End: Original strand, 32241112 - 32241253
Alignment:
| Q |
326 |
gagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaa-ctgacaaattagggatttgtgcaaag |
424 |
Q |
| |
|
||||||||||||||| |||||| |||||| || ||||||| |||| | ||| || || ||||||| ||||| |||||| || |||||||||||||||| |
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|
| T |
32241112 |
gagtcacatgaaatgtgaatgagtgaaagg-tcgagtgacataatcgaccaaacatttaaagctccttcaaaatctgacagatgagggatttgtgcaaag |
32241210 |
T |
|
| Q |
425 |
gaaggtagaccgcaaaactaaagagggaaaaagttcagaggtaga |
469 |
Q |
| |
|
|| |||||||| | ||| |||||||| |||| || ||||||||| |
|
|
| T |
32241211 |
gatggtagacctc--aaccaaagagggcaaaactttagaggtaga |
32241253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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