View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17493_low_20 (Length: 279)

Name: NF17493_low_20
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17493_low_20
NF17493_low_20
[»] chr5 (3 HSPs)
chr5 (18-162)||(29022091-29022235)
chr5 (223-263)||(29021990-29022030)
chr5 (74-134)||(28660880-28660940)
[»] chr3 (1 HSPs)
chr3 (79-130)||(13469172-13469223)
[»] chr7 (1 HSPs)
chr7 (79-125)||(10616200-10616246)
[»] chr4 (1 HSPs)
chr4 (79-117)||(1547373-1547411)
[»] chr2 (1 HSPs)
chr2 (79-119)||(44575097-44575137)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 29022235 - 29022091
Alignment:
Q  18 aatatttgaaaataaattccaatctctcagttctttcataaaaacaatgacttcagatctttatttacctgacgagtgttgggaatgcatcttcaaattc 117  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29022235 aatatttgaaaaaaaattccaatctctcagttcttccataaaaacaatgacttcagatctttatttacctgacgagtgttgggaatgcatcttcaaattc 29022136  T
Q  118 ttattcaaagacggtgacgacgacgataaccgttgctctttcaag 162  Q
     | ||||||||||||||||||||||||||||||||||||||||||    
T  29022135 ctcttcaaagacggtgacgacgacgataaccgttgctctttcaag 29022091  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 29022030 - 29021990
Alignment:
Q  223 actatatatgatccaacaccacctttcctttgtgacttatt 263  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29022030 actatatatgatccaacaccacctttcctttgtgacttatt 29021990  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 28660880 - 28660940
Alignment:
Q  74 atctttatttacctgacgagtgttgggaatgcatcttcaaattcttattcaaagacggtga 134  Q
    ||||| |||||| |||| |||||||||||||||||||||||||| | ||||| || |||||    
T  28660880 atcttcatttacgtgactagtgttgggaatgcatcttcaaattcctcttcaacgatggtga 28660940  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 13469172 - 13469223
Alignment:
Q  79 tatttacctgacgagtgttgggaatgcatcttcaaattcttattcaaagacg 130  Q
    |||||||||||||||||||||||| | |||||||||||  ||||||| ||||    
T  13469172 tatttacctgacgagtgttgggaacgtatcttcaaatttatattcaacgacg 13469223  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 10616246 - 10616200
Alignment:
Q  79 tatttacctgacgagtgttgggaatgcatcttcaaattcttattcaa 125  Q
    ||||||||||| |||||||||||||| |||||||||||  |||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatttatattcaa 10616200  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 1547373 - 1547411
Alignment:
Q  79 tatttacctgacgagtgttgggaatgcatcttcaaattc 117  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  1547373 tatttacctgacgagtgttgggaatctatcttcaaattc 1547411  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 44575097 - 44575137
Alignment:
Q  79 tatttacctgacgagtgttgggaatgcatcttcaaattctt 119  Q
    ||||||||||| ||||||||||||  |||||||||||||||    
T  44575097 tatttacctgatgagtgttgggaacacatcttcaaattctt 44575137  T

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