View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_low_21 (Length: 266)
Name: NF17493_low_21
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 36284059 - 36284296
Alignment:
| Q |
19 |
aaactgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggtttactcttgagatttggttaattatcggttaacttttttaatt |
118 |
Q |
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| T |
36284059 |
aaactgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggtttactcttgagatttggttaattatcggttaacttttttaatt |
36284158 |
T |
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| Q |
119 |
tactttctttttctcaagacaa-tatagatgttttgtgatctcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaacaata |
217 |
Q |
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| T |
36284159 |
tactttctttttctcatgacaattatagatgttttgtgatctcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaacaata |
36284258 |
T |
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| Q |
218 |
gttcctagctgtctttcatcacaccttactactttcat |
255 |
Q |
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| T |
36284259 |
gttcctagctgtctttcatcacaccttactactttcat |
36284296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 34554927 - 34555157
Alignment:
| Q |
23 |
tgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggtttactcttgagatttggttaattatcggttaacttttttaatttact |
122 |
Q |
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| T |
34554927 |
tgttgctagaaaaatgccccaatctagaatttctagagattatcaaggttagttaactcttgagatttagctaattatttcttgaatttttatttttact |
34555026 |
T |
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| Q |
123 |
ttctttttctcaagacaat-atagatgttttgtgatctcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaacaatagttc |
221 |
Q |
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| T |
34555027 |
ttgtttcattggatacaattatagttgtgttgtgacctcacttgacaggttgatgaactatgtgataatgaaattgaatggagacaaccaacaatagttc |
34555126 |
T |
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| Q |
222 |
ctagctgtctttcatcacaccttactacttt |
252 |
Q |
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| T |
34555127 |
ctagctgtctttcatcacaccttactacttt |
34555157 |
T |
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