View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17493_low_22 (Length: 249)
Name: NF17493_low_22
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 30853955 - 30853747
Alignment:
| Q |
19 |
caaggaatccacctaattgttctaatctataatagaaactggaaaggttacaggttacgactatgttcaccgtaatttgttggtgtgcatgttattattt |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
30853955 |
caaggagtccacctaattgttctaatctataatagaaactgaaaaggttac-------gactatgttcaccctaatttgttggtgtgcatatcattattt |
30853863 |
T |
|
| Q |
119 |
gacattataatctattagttttctattttacttgtaaaaaacaga-aaaatgatacccgcaattagcccatcattattccacttaatttctccactagga |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30853862 |
gacattataatctattagttttatattttacatgtaaaaaacagaaaaaatgatacccgcaattagcccatcattattccacttaatttctccactagaa |
30853763 |
T |
|
| Q |
218 |
attataccgacttcat |
233 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30853762 |
attataccgacttcat |
30853747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 15076612 - 15076702
Alignment:
| Q |
144 |
ttttacttgtaaaaaacagaaaaatgatacccgcaattagcccatc-attattccacttaatttctccactaggaattataccgacttcat |
233 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
15076612 |
ttttacttataaaaaacagaaaaataatacccgcaattagaccatctattattccaattaattgctccactagaaattataccgacttcat |
15076702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 15071461 - 15071501
Alignment:
| Q |
19 |
caaggaatccacctaattgttctaatctataatagaaactg |
59 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15071461 |
caaggagtccacctaattgttctaatctataatagaaactg |
15071501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University