View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_low_23 (Length: 248)
Name: NF17493_low_23
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43349939 - 43350171
Alignment:
| Q |
1 |
gacaaaataatgcggtagttttagaaaaagcagtggcgacaaaattcatcaatgtgatatccctgtcagtcgtaatcacctatgatatgttatctgcaga |
100 |
Q |
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| T |
43349939 |
gacaaaataatgcagtagttttagaaaaaacagtggcgacaaaattcatcaatgtgatatccatgtcagtcataatcacctatgatatgttatctgcaga |
43350038 |
T |
|
| Q |
101 |
cttcacaagatcaagcatcatttgtataacccatgtgaagttctcttctttttctggtgtcagaaaaataaaactatgtcttctcctttgagtttatccc |
200 |
Q |
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| T |
43350039 |
cttcacaagatcaagcataatttgaataacccatgtgaagttctcttctttttctggtgtcagaaaaataaaactatgtcttctcctttgagtttacccc |
43350138 |
T |
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| Q |
201 |
aactatctcagacgatggctttctgtacacgct |
233 |
Q |
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| T |
43350139 |
aactatctcagacgatggctttctgtacacgct |
43350171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 31446181 - 31446101
Alignment:
| Q |
1 |
gacaaaataatgcggtagttttagaaaaagcagtggcgacaaaattcatcaatgtgatatccctgtcagtcgtaatcacct |
81 |
Q |
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|||||| |||||||||||||| || ||| || |||||||| ||||||||||||||||||| |||| ||| |||||||| |
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| T |
31446181 |
gacaaagtaatgcggtagtttaagggaaaacaatggcgacatcattcatcaatgtgatatccttgtctgtcacaatcacct |
31446101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 30178208 - 30178361
Alignment:
| Q |
1 |
gacaaaataatgcggtagttttagaaaaagcagtggcgacaaaattcatcaatgtgatatccctgtcagtcgtaatcacctatgatatgttatctgcaga |
100 |
Q |
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|||||| |||| || |||||| || |||| || | ||||||| | ||||||| ||||||||| || ||||| |||||||| ||| ||||| ||| || |
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| T |
30178208 |
gacaaactaatacgatagtttaaggaaaaacaattgcgacaacagtcatcaacgtgatatccttgccagtcacaatcacctttgacatgttgtcttttga |
30178307 |
T |
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| Q |
101 |
cttcacaagatcaagcatcatttgtataacccatgtgaagttctcttctttttc |
154 |
Q |
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|||| ||||||||||| |||||||| || ||| || ||||| || |||||||| |
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| T |
30178308 |
gttcagaagatcaagcaacatttgtagaatccaagttaagttatcctctttttc |
30178361 |
T |
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