View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17493_low_24 (Length: 248)
Name: NF17493_low_24
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 14734962 - 14735195
Alignment:
| Q |
1 |
tactgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatcttggacaactagagcaacaaaaattaaatgcataagttaatcttctgatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14734962 |
tactgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatcttggacaagtagagcaacaaaaattaaatgcataagttaatcttctgatata |
14735061 |
T |
|
| Q |
101 |
tttcttatgataaccatacaatataaaatttaaacacaactctgcaaaacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14735062 |
tttcttatgataaccatacaatataaaatttaaacacaactctgcaaaacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcata |
14735161 |
T |
|
| Q |
201 |
agtggcttctagagcaagctttttactcaattgc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
14735162 |
agtggcttctagagcaagctttttactcaattgc |
14735195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 14741938 - 14742170
Alignment:
| Q |
2 |
actgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatcttggacaactagagcaacaaaaattaaatgcataagttaatcttctgatatat |
101 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14741938 |
actgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatat |
14742037 |
T |
|
| Q |
102 |
ttcttatgataaccatacaatataaaatttaaacacaactctgcaaaacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataa |
201 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14742038 |
ttcttatgataaccatacaatattaaatttgaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataa |
14742137 |
T |
|
| Q |
202 |
gtggcttctagagcaagctttttactcaattgc |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| |
|
|
| T |
14742138 |
gtggcttctagagcaagcttattactcatttgc |
14742170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 14998584 - 14998388
Alignment:
| Q |
17 |
ttgttttgagacttctcaaagccgtatcaatcttggacaactagagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataacca |
116 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| |||| || || |||||||| ||||| | || |||| | ||||| ||| ||||| ||| | || |
|
|
| T |
14998584 |
ttgttttgagacttgtcaaagccatatcaatcttagacagctggaacaacaaaagttaaacgtgcaaattaaccgtctgaaatacttcttctgaataaca |
14998485 |
T |
|
| Q |
117 |
tacaata-taaaatttaaacacaactctgcaaaacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagc |
215 |
Q |
| |
|
||| | || | ||||||||||||||||| | |||||| |||||| ||||||||| | ||||||||||||| | || ||||||| |||||| |||| |
|
|
| T |
14998484 |
cacatcattagattttaaacacaactctgcca---aaaaataatgaactaacctcagtgcctaattctctagtcatattggcataagctgcttcttgagc |
14998388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 29467433 - 29467219
Alignment:
| Q |
16 |
gttgttttgagacttctcaaagccgtatcaatcttggacaactagagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataacc |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||| || || |||||||| ||||||||| || |||| | ||||| ||| ||||| | | | |
|
|
| T |
29467433 |
gttgttttgagacttctcaaagccatatcaaccttagacagctggaacaacaaaagttaaatgcacaaattaaccgtctgaaatacttcttccaagtaac |
29467334 |
T |
|
| Q |
116 |
atacaatataaaattt-aaacacaactctgcaaaacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagag |
214 |
Q |
| |
|
||||| || | |||| ||||||| ||||| |||| |||| |||||||||||||||| |||||||| |||||| | || |||||||| |||||| ||| |
|
|
| T |
29467333 |
atacatcattagattttaaacacagctctgaaaaa---aaataatgaaccaacctcagtgcttaattccctagtcatattggcataagttgcttcttgag |
29467237 |
T |
|
| Q |
215 |
caagctttttactcaatt |
232 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
29467236 |
caagccttttattcaatt |
29467219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University