View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_low_25 (Length: 242)
Name: NF17493_low_25
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 40447479 - 40447681
Alignment:
| Q |
24 |
ggatcagcacattcttccccgacaagctagcttcaacttcaggcagtgacagatttgtttttgatgtttcatcagagtttccattacatgaatttgacga |
123 |
Q |
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| T |
40447479 |
ggatcagcacattcttccccgacaagctagcttcaacttcaggcagtgacagatttgtttttgatgtttcatcagagtttccattacatgaatttgacga |
40447578 |
T |
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| Q |
124 |
agtgtccgaaacatcttcatctgaagacagttcagacagtttcttcacaaccacaactggttctacacttttactttgctcctccaacattttcacttgc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40447579 |
agtgtccgaaacatcttcatctgaagacagttcagacagtttcttcacaaccacaactggttctacacttttactttgctcctccaacattttcacttgc |
40447678 |
T |
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| Q |
224 |
tcc |
226 |
Q |
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||| |
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| T |
40447679 |
tcc |
40447681 |
T |
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