View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_low_29 (Length: 220)
Name: NF17493_low_29
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47231456 - 47231674
Alignment:
| Q |
1 |
ttaggaatcaggtattgtcaaattaaatnnnnnnnngttggaatccggtatatgcagcattcaggtttgtgaaattctgagttatttatgacaagaaaac |
100 |
Q |
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| T |
47231456 |
ttaggaatcaggtattgtcaaattaaataaaaaaaacttggaatccggtatatgcagcattcaggtttgtcaaattctgagttatttatgacaagaaaac |
47231555 |
T |
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| Q |
101 |
gcatcccatactagtactttactattattacacatnnnnnnngtacgacagagtaaatattccttggttcggcaataaatcatattgaattgattaacag |
200 |
Q |
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| T |
47231556 |
gcatcccatactagtactttactattattacacat-aaaaaagtacgacaaagtaaatattccttggttcgggaataaatcatattgaattgattaacag |
47231654 |
T |
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| Q |
201 |
aaaagaataagaaaacgcat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
47231655 |
aaaagaataagaaaacgcat |
47231674 |
T |
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