View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_low_3 (Length: 635)
Name: NF17493_low_3
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 45512712 - 45512122
Alignment:
| Q |
1 |
attggacacccgctgaaattacttatagacaagaccaaatcagacaagtgttccgactgtgacatagatgagctcacatatggaacatctattggtgaac |
100 |
Q |
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| T |
45512712 |
attggactcccactgaaattatttccagacaagtccaaataagtcaagtgttccaattgcaacaaagatgagctcacatttggagcaactattggtgaac |
45512613 |
T |
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| Q |
101 |
aaggcatgtaagcga---------acaaaaagaagtgaccaaaatgttcttcttctcgcgaccaagatggttggtgacaaggattcatgagatcaagttt |
191 |
Q |
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| T |
45512612 |
aaggcatgtaatcgtccaaattgtacaaatagtagtgaccaaaatgttcttcttctcgcgaccaaaatggttggtgacaaggattcatgagatcaagttt |
45512513 |
T |
|
| Q |
192 |
gacaacatgtctagtaacattgtcacaaccaatgccttcccattggcaacagtgagtgcctttccatgatgaaagcttgtttggtgaatcatgtgcaatg |
291 |
Q |
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| T |
45512512 |
gacaacatgtctagtaacattgtcacaaccaatgccttcccattggcaacagtgagtgcctttccatgatgaaagcttgtttggtgaatcatgtgcaatg |
45512413 |
T |
|
| Q |
292 |
gatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagcatatttgtgcaatttcaatcaacaccaaaa |
391 |
Q |
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| T |
45512412 |
gatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagcatatttgtgcaatttcaatcaacaccaaaa |
45512313 |
T |
|
| Q |
392 |
gtactacacatttgtaatatcttcccatgttttctatctctgtttctattgaaataattgaatgatggttttcatttcactcacacaacttatataatac |
491 |
Q |
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| T |
45512312 |
gtactacacatttgtaatatcttcccatgttttctatctctgtttctattgaaataattgaatgatggttttcatttcactcacacaacttatataatac |
45512213 |
T |
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| Q |
492 |
acccatcattttcacatgt---aagagctaaaataacttcctcgaagcaccaaacattcaaactataaccaaatgtcaaggcaagttcttt |
579 |
Q |
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| T |
45512212 |
acccatcattttcacatgtaagaagagctaaaataacttcctcgaagcaccgaacattcaaactataaccaaatgtcaaggcaagttcttt |
45512122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 617
Target Start/End: Complemental strand, 45512109 - 45512080
Alignment:
| Q |
588 |
taatctaatgtatttttaattatgcctttc |
617 |
Q |
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| T |
45512109 |
taatctaatgtatttttaattatgcctttc |
45512080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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