View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17493_low_30 (Length: 210)
Name: NF17493_low_30
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17493_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 36765229 - 36765409
Alignment:
| Q |
14 |
attatactcttgagggtaaaatgggaataatatcatctaatatattccacttcattctagtactccctcacactcactcttgagacatacacaaacaatg |
113 |
Q |
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| T |
36765229 |
attatactcttgagggtaaaatgggaataatatcatctaatatattccacttcattctagtactccctcacactcactcttgagacatacacaaacaatg |
36765328 |
T |
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| Q |
114 |
tctctctgcaaaagaaagagagagacacacaacagcctcatgctcagcttgaattagagagaccaacatcatcatcatttt |
194 |
Q |
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| T |
36765329 |
tctctctgcaaaacaaagaaagagacacacaacagcctcatgctcagcttgaattagagagaccaacatcatcatcatttt |
36765409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 36746450 - 36746623
Alignment:
| Q |
17 |
atactcttgagggtaaaatgggaataatatcatctaatatattccacttcattctagtactccctcacactcactcttgagacatacacaaacaatgtct |
116 |
Q |
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| T |
36746450 |
atacgcttgagggtagaatgggaataatatcgtctaatatattccacctcattctactactccctcac---cactctcgagacatacaccaacaatgtct |
36746546 |
T |
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| Q |
117 |
ctctgcaaaagaaagagagagacacacaacagcctcatgctcagcttgaattagagag--accaacatcatcatcat |
191 |
Q |
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| T |
36746547 |
ctctgcaaaacaaagaaagagacacacaacagcctcatgctccgcttgaactagagagaaaccaacatcatcatcat |
36746623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 36769971 - 36770038
Alignment:
| Q |
108 |
acaatgtctctctgcaaaagaaagagagagacacacaacagcctcatgctcagcttgaattagagaga |
175 |
Q |
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| T |
36769971 |
acaatgtctctctggaagataaagaaagatacacactacaacctcatgctcggcttgaactagagaga |
36770038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 36752291 - 36752348
Alignment:
| Q |
53 |
atatattccacttcattctagtactccctcacactcactcttgagacatacacaaaca |
110 |
Q |
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| T |
36752291 |
atatattccacttcattctacaactttctcacactcactctcgaggcatacaccaaca |
36752348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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