View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17493_low_6 (Length: 550)

Name: NF17493_low_6
Description: NF17493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17493_low_6
NF17493_low_6
[»] chr8 (5 HSPs)
chr8 (1-533)||(5055771-5056303)
chr8 (67-159)||(11319448-11319542)
chr8 (58-142)||(2447340-2447425)
chr8 (392-485)||(5179645-5179737)
chr8 (116-160)||(27318599-27318643)
[»] chr1 (6 HSPs)
chr1 (66-140)||(29821722-29821798)
chr1 (68-157)||(33717198-33717289)
chr1 (68-140)||(28026909-28026983)
chr1 (114-164)||(6263020-6263070)
chr1 (115-165)||(1498034-1498084)
chr1 (115-159)||(29820448-29820492)
[»] chr2 (3 HSPs)
chr2 (115-161)||(29363198-29363244)
chr2 (121-159)||(44608205-44608243)
chr2 (114-158)||(34655205-34655249)
[»] chr5 (2 HSPs)
chr5 (111-156)||(10839199-10839244)
chr5 (67-160)||(12929694-12929791)
[»] chr4 (2 HSPs)
chr4 (109-160)||(48485943-48485993)
chr4 (115-159)||(31550714-31550758)
[»] chr7 (1 HSPs)
chr7 (68-109)||(26737722-26737763)
[»] chr3 (1 HSPs)
chr3 (365-417)||(53698791-53698843)


Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 5055771 - 5056303
Alignment:
Q  1 tttaaacatataagttgtactttgtaacagaaatgacctaatagcaccctgcattcggacacataagcacaattggccgaactcggtgttcaaatattgt 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  5055771 tttaaacatataagttgtactttgtatcagaaatgacctaatagcaccctgcattcagacacataagcacaattggccaaactcggtgttcaaatattgt 5055870  T
Q  101 gtgttctctctgtgtttttcgtatctttttacttttgaaccagggttgttgttctaacaatatttgtatggtaaactcttgtgagaatcaaccaggactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5055871 gtgttctctctgtgtttttcgtatctttttacttttgaaccagggttgttgttctaacaatatttgtatggtaaactcttgtgagaatcaaccaggactt 5055970  T
Q  201 ttttgacataattcaaacaatgacacttggtaataagaactacttaacttttatcatttggtaattctacttgcactttataaccattttagttatgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5055971 ttttgacataattcaaacaatgacacttggtaataagaactacttaacttttatcatttggtgattctacttgcactttataaccattttagttatgatg 5056070  T
Q  301 tttatactgtgttgcagcttggttgtggtcaaagcatcaagttttacagctccaatgcatcttctattctatctgagaagactcaagcctataattctag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5056071 tttatactgtgttgcagcttggttgtggtcaaagcatcaagttttacagctccaatgcatcttctattctatctgagaagactcaagcctataattctag 5056170  T
Q  401 aaagattaactcaaccaagttgacggcgagtcatgacttagagcacatgacaccagcaaaacaagttacaaagattcagcaagattatttcatcaataat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5056171 aaagattaactcaaccaagttgacggcgagtcatgacttagagcacatgacaccagcaaaacaagttacaaagattcagcaagattatttcatcaataat 5056270  T
Q  501 agtaagaattctttgaaaacagttgatggtgaa 533  Q
    ||||||||||||||||||||| |||||||||||    
T  5056271 agtaagaattctttgaaaacacttgatggtgaa 5056303  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 11319448 - 11319542
Alignment:
Q  67 gcacaattggccgaactcggtgttcaaatattgtgtgttctctc--tgtgtttttcgtatctttttacttttgaaccagggttgttgttctaaca 159  Q
    |||||||| || |||||| ||| |||||| | ||||||||| |   |||||||||||||||| ||||||||||||| ||||||| | ||||||||    
T  11319448 gcacaattagctgaactccgtgatcaaatctcgtgtgttctttgcttgtgtttttcgtatctgtttacttttgaactagggttgctattctaaca 11319542  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 2447340 - 2447425
Alignment:
Q  58 gacacataagcacaattggccgaactcggtgttcaaatat-tgtgtgttctctctgtgtttttcgtatctttttacttttgaacca 142  Q
    ||||| || |||||||||||||| ||| ||| |||| ||  ||||| |||| | ||||||||||||||||||||||||||| ||||    
T  2447340 gacacgtaggcacaattggccgacctccgtgatcaagtacgtgtgttttctgtttgtgtttttcgtatctttttacttttgcacca 2447425  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 485
Target Start/End: Complemental strand, 5179737 - 5179645
Alignment:
Q  392 taattctagaaagattaactcaaccaagttgacggcgagtcatgacttagagcacatgacaccagcaaaacaagttacaaagattcagcaagat 485  Q
    |||||| |||||||||||||  ||||||||||||   |||||||||||| |  |||||| || ||||||||||||||| || | ||||||||||    
T  5179737 taattccagaaagattaacttcaccaagttgacgta-agtcatgacttataagacatgaaacaagcaaaacaagttaccaaaactcagcaagat 5179645  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 27318599 - 27318643
Alignment:
Q  116 ttttcgtatctttttacttttgaaccagggttgttgttctaacaa 160  Q
    |||| |||||||||||||||||||||| |||||  ||||||||||    
T  27318599 tttttgtatctttttacttttgaaccaaggttgcggttctaacaa 27318643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 29821722 - 29821798
Alignment:
Q  66 agcacaattggccgaactcggtgttcaaatattgtgtgttctc--tctgtgtttttcgtatctttttacttttgaac 140  Q
    ||||||||||||| ||||| ||| |||||||| ||||||||||  | |||| |||||||||||||||||||||||||    
T  29821722 agcacaattggcccaactccgtgatcaaatatagtgtgttctccatttgtgattttcgtatctttttacttttgaac 29821798  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 33717289 - 33717198
Alignment:
Q  68 cacaattggccgaactcggtgttcaaatattgtgtgttctctctgtg--tttttcgtatctttttacttttgaaccagggttgttgttctaa 157  Q
    ||||||||| ||| |||  || |||||| ||||||||||||| | ||  |||||||||||| ||||||||||||| ||||||||||||||||    
T  33717289 cacaattggtcgagctccttgatcaaatcttgtgtgttctctgtttgcatttttcgtatctgtttacttttgaactagggttgttgttctaa 33717198  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 28026983 - 28026909
Alignment:
Q  68 cacaattggccgaactcggtgttcaaatattgtgtgttctctct--gtgtttttcgtatctttttacttttgaac 140  Q
    |||||||||||||||||   | ||||||||  |||||||||| |  |||||||||||||||||||||||||||||    
T  28026983 cacaattggccgaactccacgatcaaatatcttgtgttctctatttgtgtttttcgtatctttttacttttgaac 28026909  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 6263020 - 6263070
Alignment:
Q  114 gtttttcgtatctttttacttttgaaccagggttgttgttctaacaatatt 164  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||| ||||    
T  6263020 gtttttcgtatctattttcttttgaaccaggattgttgttctaacagtatt 6263070  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 1498034 - 1498084
Alignment:
Q  115 tttttcgtatctttttacttttgaaccagggttgttgttctaacaatattt 165  Q
    |||||||||||| ||| ||||||||||||||||  ||||||||||| ||||    
T  1498034 tttttcgtatctgttttcttttgaaccagggttactgttctaacaaaattt 1498084  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 29820492 - 29820448
Alignment:
Q  115 tttttcgtatctttttacttttgaaccagggttgttgttctaaca 159  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||||||    
T  29820492 ttttttgtatctgttttcttttaaaccagggttgttgttctaaca 29820448  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 29363198 - 29363244
Alignment:
Q  115 tttttcgtatctttttacttttgaaccagggttgttgttctaacaat 161  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||    
T  29363198 tttttcgtatccgtttacttttgaaccagggttgttgttctaacaat 29363244  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 44608243 - 44608205
Alignment:
Q  121 gtatctttttacttttgaaccagggttgttgttctaaca 159  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  44608243 gtatctttttacttttgaaccagggctgttgttctaaca 44608205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 34655249 - 34655205
Alignment:
Q  114 gtttttcgtatctttttacttttgaaccagggttgttgttctaac 158  Q
    ||||||||||||| |||||||||||| || |||| ||||||||||    
T  34655249 gtttttcgtatctgtttacttttgaatcaaggttcttgttctaac 34655205  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 10839199 - 10839244
Alignment:
Q  111 tgtgtttttcgtatctttttacttttgaaccagggttgttgttcta 156  Q
    |||||||||||||||| ||| || ||||||||||||||||||||||    
T  10839199 tgtgtttttcgtatctgttttctcttgaaccagggttgttgttcta 10839244  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 12929694 - 12929791
Alignment:
Q  67 gcacaattggccgaactcggtgttcaaatattgtgtgttctctc--tgtgtttttcgtatctttt--tacttttgaaccagggttgttgttctaacaa 160  Q
    |||| ||||| | ||||| ||| |||||||| |||| ||||||   |||||||| ||||||||||  || |||||||||||||||| |||||||||||    
T  12929694 gcacgattggtcaaactccgtgatcaaatatcgtgtcttctctagttgtgttttacgtatcttttattaattttgaaccagggttgctgttctaacaa 12929791  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 48485993 - 48485943
Alignment:
Q  109 tctgtgtttttcgtatctttttacttttgaaccagggttgttgttctaacaa 160  Q
    |||||||||||| ||| |||||||||||||||| ||||| ||||||||||||    
T  48485993 tctgtgtttttcatatgtttttacttttgaacc-gggttcttgttctaacaa 48485943  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 31550758 - 31550714
Alignment:
Q  115 tttttcgtatctttttacttttgaaccagggttgttgttctaaca 159  Q
    |||||||||| | ||||||||||||||||||||  ||||||||||    
T  31550758 tttttcgtatatatttacttttgaaccagggtttctgttctaaca 31550714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 26737722 - 26737763
Alignment:
Q  68 cacaattggccgaactcggtgttcaaatattgtgtgttctct 109  Q
    ||||||||||||||||| ||| |||||||| |||||||||||    
T  26737722 cacaattggccgaactccgtgatcaaatatcgtgtgttctct 26737763  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 53698843 - 53698791
Alignment:
Q  365 tattctatctgagaagactcaagcctataattctagaaagattaactcaacca 417  Q
    |||||| ||| |||||||||||| ||||||||| |||||||| |||| |||||    
T  53698843 tattctgtctaagaagactcaagtctataattccagaaagatcaacttaacca 53698791  T

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