View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17494_high_10 (Length: 297)
Name: NF17494_high_10
Description: NF17494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17494_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 4543335 - 4543615
Alignment:
| Q |
16 |
agatgaatcaaaattagactcaaaaatgtgtggaaatacaacatacactagctctagacaacaatgattccataaaaagtgatagagaactcgtgaacta |
115 |
Q |
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| T |
4543335 |
agatgaatcaaaattagactcaaaa-tgtgtggaaatacaacatacactagctctagacaacaatgattccataaaaagtgatagagaactcgtgaacta |
4543433 |
T |
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| Q |
116 |
gcatctcaagctttagccctaataactagagagtactccttcaaactaacttgtacaacataagatagattagtacacaattttatttttacaaaaaata |
215 |
Q |
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| T |
4543434 |
gcatctcaagctttagccctgataactagagagtactccttcaaactaacttgtacaacataagatagattagtacacaattttatttttacaaaaaata |
4543533 |
T |
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| Q |
216 |
agggaaagggaaaatatcaaccggctaaaagcatacgaaaaatcttacactgtcgacaaaatgaactattttgtcctaaagc |
297 |
Q |
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| T |
4543534 |
agggaaagggaaaatatcaaccggctaaaagcatacgaaaaatcttacactgtagacaaaatgaactattttgtcctaaagc |
4543615 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 31242049 - 31241982
Alignment:
| Q |
138 |
taactagagagtactccttcaaactaacttgtacaacataagatagattagtacacaattttattttt |
205 |
Q |
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| T |
31242049 |
taactagagtgttctccttcaaaataacctgtacaacataagaaagattagtacacattttttttttt |
31241982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 4880852 - 4880925
Alignment:
| Q |
123 |
aagctttagccctaataactagagagtactccttcaaactaacttgtacaacataagatagattagtacacaat |
196 |
Q |
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| T |
4880852 |
aagctttagccctaataactggagaattctccttcaaacttacctgtacaacatatgaaagattacgacacaat |
4880925 |
T |
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