View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17494_high_16 (Length: 227)
Name: NF17494_high_16
Description: NF17494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17494_high_16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 12790369 - 12790163
Alignment:
| Q |
20 |
aaagtagtgatacataattgaggtaaattcaaggaaaaggattggatttggatttgaccatcttttttagctaagatagaaagcaatgacacaaacctac |
119 |
Q |
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| T |
12790369 |
aaagtagtgatacataattgaggtaaattcaaggaaaaggattggatttggatttgactatcttttttagctaagatagaaagcaatgacacaaacctac |
12790270 |
T |
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| Q |
120 |
ctttccttattaatcaacctgatcccatctttgcttccacaagctaccccaccatattaagaaataaatgattgtttcgtattagaaaattgaaacctca |
219 |
Q |
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| T |
12790269 |
ctttccttattaatcaacctgatcccatc-ttgcttccccaagctaccccaccatattaagaaataaatgattgtttcatattagaaaattgaaacctca |
12790171 |
T |
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| Q |
220 |
taattact |
227 |
Q |
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|||||||| |
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| T |
12790170 |
taattact |
12790163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 12771608 - 12771431
Alignment:
| Q |
6 |
actaagcacccccaaaagtagtgatacataattgaggtaaattcaaggaaaaggattggatttggatttgaccatcttttttagctaagata-gaaagca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||| |
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| T |
12771608 |
actaagcacccccaaaagtagtgatacataattgaggtaaattcaaggaaaaggattggatttggatttgactatcttttttagcaaagagaggaaagca |
12771509 |
T |
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| Q |
105 |
atgacacaaacctacctttccttattaatcaacctgatcccatctttgcttccacaagctaccccaccatattaagaaa |
183 |
Q |
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| T |
12771508 |
aagacacaaacctacctttccttattaatcaacctgatcccatc-ttgcttctacaagctaccccaccatattaagaaa |
12771431 |
T |
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