View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17494_high_2 (Length: 568)
Name: NF17494_high_2
Description: NF17494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17494_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 45 - 390
Target Start/End: Original strand, 42037599 - 42037940
Alignment:
| Q |
45 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagagnnnnnnnnnntattcactcacgggtttta |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
42037599 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagaaagaaaa-----aatcactcacgggtttta |
42037693 |
T |
|
| Q |
145 |
agagttttgttaactcttgtacttttctcttccaattttcaataatatttctttgtttgccattnnnnnnn-tacacatcagtattgataatataataag |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42037694 |
agagttttgttaactcttgtacttttctcctccaattttcaataatatttctttgtttgccattaaaaaaaatacacatcagtattgataatataataag |
42037793 |
T |
|
| Q |
244 |
cataagtatttacaatttcttaaggtgcatcatgttcatactttactannnnnnnatggcacagataaatatattaacaaaataaagaggttgtgcaaga |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037794 |
cataagtatttacaatttcttaaggtgcatcatgttcatactttactatttttttatggcaaagataaatatattaacaaaataaagaggttgtgcaaga |
42037893 |
T |
|
| Q |
344 |
gtgctacaaaacaaacagaaaatagcagcctgagccccaggggtacc |
390 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42037894 |
gtgctacaaaacaaacagaaagtagcagcctgagccccaggggtacc |
42037940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 459 - 550
Target Start/End: Original strand, 42038009 - 42038100
Alignment:
| Q |
459 |
tcccaaaaacctgagaataacctccaaaaccagactactcgtcggaagttgcccattccctaggggaacagggagagggaccaaacctaatg |
550 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42038009 |
tcccaaaaacctgagaataacctacaaaaccagactacccgtcggaagttgcccattccctaggggaacagggagagggaccaaacctaatg |
42038100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University