View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17494_high_4 (Length: 408)
Name: NF17494_high_4
Description: NF17494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17494_high_4 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 30 - 408
Target Start/End: Original strand, 7343837 - 7344214
Alignment:
| Q |
30 |
aaggttaaaccaaaatcattcaagttatttgatgatttgatactttattcttattaataaaattataannnnnnnctatgggaagtatcatcagcatcct |
129 |
Q |
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| T |
7343837 |
aaggttaaaccaaaatcattcaagttatttgatgatttgatactttattcttattaataaaattataatttttt-ctatgggaagtatcatcagcatcct |
7343935 |
T |
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| Q |
130 |
cttttggacaatgaaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaat |
229 |
Q |
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| T |
7343936 |
cttttggacaatgaaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaat |
7344035 |
T |
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| Q |
230 |
atctttgtttaatccattgtttccaatgaaacgtgctacagaacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattggc |
329 |
Q |
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| T |
7344036 |
atctttgtttaatccagtgtttccaatgaaacgtgctacagaacaatctggagagaacaagcttgacgtttcatactcttttgcaccgcccattattggc |
7344135 |
T |
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| Q |
330 |
atttttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacgcacctcacttcattgctca |
408 |
Q |
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| T |
7344136 |
attcttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacgccactcacttcattgctca |
7344214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 11664663 - 11664302
Alignment:
| Q |
30 |
aaggttaaaccaaaatcattcaagttatttgatgatttgata---ctttattcttattaataaaattataannnnnnnc-tatgggaagtatcatcagca |
125 |
Q |
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| T |
11664663 |
aaggttaaaccaaaatcattccatttatttgatgatttgatattactttattcttatcaataaaattataaattttttcatattg-aagtatcatttgcg |
11664565 |
T |
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| Q |
126 |
tcctcttttggacaatgaaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttc |
225 |
Q |
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| T |
11664564 |
tgctctttaggacaataaaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagggagggccaaattctccacaattc |
11664465 |
T |
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| Q |
226 |
caatatctttgtttaatccattgtttccaatgaaacgtgctacagaacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattat |
325 |
Q |
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| T |
11664464 |
caatatttttgtttaatccattgttcccaatgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattat |
11664365 |
T |
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| Q |
326 |
tggcatttttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacac |
388 |
Q |
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| T |
11664364 |
tggcatttttgcaccaatgttcacacgactcacatagttaggtttatatgtttggcccaacac |
11664302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 143 - 408
Target Start/End: Complemental strand, 11656090 - 11655825
Alignment:
| Q |
143 |
aaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaatatctttgtttaat |
242 |
Q |
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| T |
11656090 |
aaattatctcctgcatacaactccttgcccatcaattccacttgtacaactcatgctagggagactcaaattctccaccatcgcaatatcattgttgaat |
11655991 |
T |
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| Q |
243 |
ccattgtttccaatgaaacgtgctacagaacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattggcatttttgctccaa |
342 |
Q |
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| T |
11655990 |
ccgtcattaccaacaaaacgagctaccgaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcatttttgctccaa |
11655891 |
T |
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| Q |
343 |
tgttcacacgactcacatagttaggtttatatgtttggcccaacacgcacctcacttcattgctca |
408 |
Q |
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| T |
11655890 |
tgttcacacgactcacatagttaggtttatatgtttggcccaacacaccacttacttcattgctca |
11655825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 141 - 408
Target Start/End: Complemental strand, 11669860 - 11669593
Alignment:
| Q |
141 |
tgaaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaatatctttgttta |
240 |
Q |
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| T |
11669860 |
tgaaattatctcctgcaaacaactccttctccatcaacaccacttgtgcaactcatgctagggagcataagatcttccaccatcgcaatatcattgttga |
11669761 |
T |
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| Q |
241 |
atccattgtttccaatgaaacgtgctacagaacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattggcatttttgctcc |
340 |
Q |
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| T |
11669760 |
atccgtcattaccaacaaaacgagctacggaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcattttcgctcc |
11669661 |
T |
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| Q |
341 |
aatgttcacacgactcacatagttaggtttatatgtttggcccaacacgcacctcacttcattgctca |
408 |
Q |
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| T |
11669660 |
aatgttcacacgactcacatagttagatttatatgtttggcccaacacaccacttacttcattgctca |
11669593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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