View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17494_low_17 (Length: 239)
Name: NF17494_low_17
Description: NF17494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17494_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7344180 - 7344400
Alignment:
| Q |
1 |
tgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgataccataattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7344180 |
tgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgataccataattg |
7344279 |
T |
|
| Q |
101 |
tgaatcctcgagtcttcttcggttataggaacaaccttggcagttattctaaaacttccttcaacttcaacaatgatgttgtttgtagaagtttccctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7344280 |
tgaatcctcgagtcttcttcggttataggaacaaccttggcagttattctaaaatttccttcaacttcaacaatgatgttgtttgtagaagtttccctaa |
7344379 |
T |
|
| Q |
201 |
caatggacacactagatgatt |
221 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
7344380 |
caatggacacactagacgatt |
7344400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11664316 - 11664096
Alignment:
| Q |
1 |
tgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgataccataattg |
100 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11664316 |
tgtttggcccaacacaccatttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatcatctttggtgataccataattg |
11664217 |
T |
|
| Q |
101 |
tgaatcctcgagtcttcttcggttataggaacaaccttggcagttattctaaaacttccttcaacttcaacaatgatgttgtttgtagaagtttccctaa |
200 |
Q |
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|
||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11664216 |
tgaatcctcgagtcttcttcggttatagggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgtagaagtttccctaa |
11664117 |
T |
|
| Q |
201 |
caatggacacactagatgatt |
221 |
Q |
| |
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||| ||| || | |||||||| |
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| T |
11664116 |
caaaggataccccagatgatt |
11664096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11655859 - 11655650
Alignment:
| Q |
1 |
tgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgataccataattg |
100 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11655859 |
tgtttggcccaacacaccacttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatcatctttggtgataccataatta |
11655760 |
T |
|
| Q |
101 |
tgaatcctcgagtcttcttcggttataggaacaaccttggcagttattctaaaacttccttcaacttcaacaatgatgttgtttgtagaagtttccctaa |
200 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
11655759 |
tgaaccctcgagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgttgaagtttccctaa |
11655660 |
T |
|
| Q |
201 |
caatggacac |
210 |
Q |
| |
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||| |||||| |
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|
| T |
11655659 |
caaaggacac |
11655650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11669627 - 11669418
Alignment:
| Q |
1 |
tgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagcaaaacaatcatctttggtgataccataattg |
100 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11669627 |
tgtttggcccaacacaccacttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatcatctttggtgataccataatta |
11669528 |
T |
|
| Q |
101 |
tgaatcctcgagtcttcttcggttataggaacaaccttggcagttattctaaaacttccttcaacttcaacaatgatgttgtttgtagaagtttccctaa |
200 |
Q |
| |
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|||| ||||||||||||||||||||| || |||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
11669527 |
tgaaccctcgagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaataatgttgtttgttgaagtttccctaa |
11669428 |
T |
|
| Q |
201 |
caatggacac |
210 |
Q |
| |
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||| |||||| |
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|
| T |
11669427 |
caaaggacac |
11669418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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