View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17494_low_20 (Length: 213)

Name: NF17494_low_20
Description: NF17494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17494_low_20
NF17494_low_20
[»] chr8 (2 HSPs)
chr8 (17-144)||(25878832-25878959)
chr8 (145-184)||(25879350-25879390)
[»] chr2 (5 HSPs)
chr2 (23-144)||(14274644-14274765)
chr2 (23-144)||(14296510-14296631)
chr2 (23-144)||(14312625-14312746)
chr2 (23-137)||(14311286-14311400)
chr2 (23-144)||(14306912-14307027)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 25878832 - 25878959
Alignment:
Q  17 accatcataactatgattaagttgatctatttgaatactccttaaccaatgctgcaaaaattgaaggtctttcaagcaaacgtgatggcttatcatattc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25878832 accatcataactatgattaagttgatctatttgaatactccttaaccaatgctgcaaaaattgaaggtctttcaagcaaacgtgatggcttatcatattc 25878931  T
Q  117 ctttgcaaaccctgccaaaaacatcaaa 144  Q
    ||||||||| ||||||||||||||||||    
T  25878932 ctttgcaaaacctgccaaaaacatcaaa 25878959  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 25879350 - 25879390
Alignment:
Q  145 gtaataattgtaaggataaaaaac-tttgagaaaacactat 184  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  25879350 gtaataattgtaaggataaaaaacttttgagaaagcactat 25879390  T

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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 14274644 - 14274765
Alignment:
Q  23 ataactatgattaagttgatctatttgaatactccttaaccaatgctgcaaaaattgaaggtctttcaagcaaacgtgatggcttatcatattcctttgc 122  Q
    |||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||    
T  14274644 ataactatcattaagctgatctattagaatactccttaaccaatgctgcaaaaagtgaatgcctttcaagcaaacgtgatggcttgtcatattcctttgc 14274743  T
Q  123 aaaccctgccaaaaacatcaaa 144  Q
    ||| ||||||||||||||||||    
T  14274744 aaatcctgccaaaaacatcaaa 14274765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 14296510 - 14296631
Alignment:
Q  23 ataactatgattaagttgatctatttgaatactccttaaccaatgctgcaaaaattgaaggtctttcaagcaaacgtgatggcttatcatattcctttgc 122  Q
    |||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||    
T  14296510 ataactatcattaagctgatctattagaatactccttaaccaatgctgcaaaaagtgaaggcctttcaagcaaacgtgatggcttgtcatattcctttgc 14296609  T
Q  123 aaaccctgccaaaaacatcaaa 144  Q
    | | ||||||||||||||||||    
T  14296610 ataacctgccaaaaacatcaaa 14296631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 14312625 - 14312746
Alignment:
Q  23 ataactatgattaagttgatctatttgaatactccttaaccaatgctgcaaaaattgaaggtctttcaagcaaacgtgatggcttatcatattcctttgc 122  Q
    ||||| || |||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||    
T  14312625 ataaccatcattaagctgatctattagaatactccttaaccaatgctgcaaaaagtgaaggcctttcaagcaaacgtgatggcttgtcatattcctttgc 14312724  T
Q  123 aaaccctgccaaaaacatcaaa 144  Q
    ||| ||||||||||| ||||||    
T  14312725 aaaacctgccaaaaatatcaaa 14312746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 14311286 - 14311400
Alignment:
Q  23 ataactatgattaagttgatctatttgaatactccttaaccaatgctgcaaaaattgaaggtctttcaagcaaacgtgatggcttatcatattcctttgc 122  Q
    |||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||| ||  ||||||||||||||    
T  14311286 ataactatcattaagctgatctattagaatactccttaaccactgctgcaaaaagtgaaggcctttcaagcaaacatgatgcctagtcatattcctttgc 14311385  T
Q  123 aaaccctgccaaaaa 137  Q
    ||| |||||||||||    
T  14311386 aaaacctgccaaaaa 14311400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 14306912 - 14307027
Alignment:
Q  23 ataactatgattaagttgatctatttgaatactccttaaccaatgctgcaaaaattgaaggtctttcaagcaaacgtgatggcttatcatattcctttgc 122  Q
    |||||||| |||||| ||||||||| |||||      ||||||||||||||||| |||| |  |||||||||||||||||||||| ||| ||||||||||    
T  14306912 ataactatcattaagctgatctattagaata------aaccaatgctgcaaaaagtgaatgcttttcaagcaaacgtgatggcttgtcaaattcctttgc 14307005  T
Q  123 aaaccctgccaaaaacatcaaa 144  Q
    ||| |||  ||||||| |||||    
T  14307006 aaaacctagcaaaaacgtcaaa 14307027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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