View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17494_low_8 (Length: 328)
Name: NF17494_low_8
Description: NF17494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17494_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 35505459 - 35505181
Alignment:
| Q |
12 |
ataggaagaaagagatacacaagtgtgtgatttatatataagtataaggagtgtgtgaagtgtgaatagatgattatgtatttatatatattggtatagt |
111 |
Q |
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| T |
35505459 |
ataggaagaaagagatacacaagtgtgtgatttatatataagtataaggagtgtgtgaagtgtgaatagatgattatgtatttatatatattggtatagt |
35505360 |
T |
|
| Q |
112 |
gaatgaatgaaatgaatggttttgttacgagtcagccacccaaaatcttccttgcnnnnnnnccaaccttggaagtgttactggcaagaaattaaagttc |
211 |
Q |
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| T |
35505359 |
gaatgaatgaaatgaatggttttgttacgagtcagccacccaaaatcttccttgctttttttccaaccttggaagtgttactggcaagaaattaaagttc |
35505260 |
T |
|
| Q |
212 |
tttcgtttctattcacgcgcctctattcgcgagtggtttcacgcgtcaatcatagccacactccttattatagtattac |
290 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35505259 |
tttcgtttctatacacgcgcctctattcgcgagtggtttcacgcgtcaatcatagccacactccttattatagtattac |
35505181 |
T |
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