View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17495_high_12 (Length: 209)
Name: NF17495_high_12
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17495_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 13553480 - 13553669
Alignment:
| Q |
8 |
agaagcaaaggggactgacctaataaataaatattaaaataagctacttgagctaaacaatgagatttccaaacaaggtaggt---actcaagttctata |
104 |
Q |
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| T |
13553480 |
agaaacaaagaggactgacctaataaataaatattaaaataagctacttgagctaaacaatgagatttccaaacaaggtaggtcctactcaagttctata |
13553579 |
T |
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| Q |
105 |
aataacatccctcaccatgtcataaaccgcatcacaagttatatactagttatatttttattatatacttctcctttcattttcttcttg |
194 |
Q |
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| T |
13553580 |
aatagcatccctcaccatgtcataaaccgcatcacaagttatatactagttgtatttttattatatacttctcctttcattttcttcttg |
13553669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 13529681 - 13529779
Alignment:
| Q |
95 |
aagttctataaataacatccctcaccatgtcataaaccgcatcacaagttatatactagttatatttttattatatacttctcctttcattttcttcttg |
194 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||| || || ||||| |||| |||||||||| || ||||||||| ||||||| |
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| T |
13529681 |
aagttctataaatatcatccctcactatgtcataaaccgcatcacaaactaaat--tagttgtattcatattatataccacttctttcatttacttcttg |
13529778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 13536239 - 13536337
Alignment:
| Q |
95 |
aagttctataaataacatccctcaccatgtcataaaccg-catcacaagttatatactagttatatttttattatatacttctcctttcattttcttctt |
193 |
Q |
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|||||||||||||| ||| ||||||||| ||||||||| ||||||||| | || ||||| |||| ||||||| | ||||| ||||||||||||||| |
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| T |
13536239 |
aagttctataaataccattcctcaccatctcataaacccacatcacaagcgaaat--tagttgtattcatattatacatttctcttttcattttcttctt |
13536336 |
T |
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