View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17495_high_6 (Length: 342)
Name: NF17495_high_6
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17495_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 11178564 - 11178844
Alignment:
| Q |
49 |
aacaagaagaaaagaagtattattgtaaaaattgattgagtttggtatagtgaaataagagtattgaaaaataactttaccaaactgaaagaatcttgtt |
148 |
Q |
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| T |
11178564 |
aacaagaagaaaagaagtgttattgtaaaaattgattgagtttggtatagtgaaacaagagtattgaaaaataactttaccaaactgaaagaatcttgtt |
11178663 |
T |
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| Q |
149 |
cttggttcttcaagtctgtctcctcttaacgtctcttccgtatctcaacttcattttgagaagtggtttatatagagagttttaaaccacaatagaagtg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11178664 |
cttggttcttcaagtctgtctcctcttaacgtctcttccgtatctcaacttcattttgagaagtggtttatatagagagtttgaaaccacaatagaagtg |
11178763 |
T |
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| Q |
249 |
ccaacgatgtgtttggttgtatcagcaattattgtcgttatttgcatgctcgcatgaaaatgctccaactagcatcattct |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11178764 |
ccaacgatgtgtttggttgtatcagcaattattgtcgttatttgcatgctcgcatgaaaatgctccaactagcatcattct |
11178844 |
T |
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