View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17495_high_9 (Length: 313)

Name: NF17495_high_9
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17495_high_9
NF17495_high_9
[»] chr8 (1 HSPs)
chr8 (1-295)||(41095565-41095859)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 41095565 - 41095859
Alignment:
Q  1 aaatgacaaggcagagaaaagctcaacaccaactgccactgcctctccaggttctgcagaaaataagcctactacacctacaaaagatgatactgctgct 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41095565 aaatgacaaggcagagaaaagctcaacaccaactgctactgcctctccaggttctgcagaaaataagcctactacacctacaaaagatgatgctgctgct 41095664  T
Q  101 gctgcttctgctaatggtgaacaacaagatcctccagcagttgagggtgagcaagttgctagttctgagccaccagctgctcagtgatgaggacaatatg 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41095665 gctgcttctgttaatggtgaacaacaagatcctccagcagttgagggtgagcaagttgctagttctgagccaccagctgctcagtgatgaggacaatatg 41095764  T
Q  201 ttattcttttttcttggcaattcttttagatatatacctannnnnnngagctttctattcttacattcattaagaataagtgatggacatagtag 295  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41095765 ttattcttttttcttggcaattcttttagatatatacctatttttttgagctttctattcttacattcattaagaataagtgatggacatagtag 41095859  T

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