View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17495_low_11 (Length: 337)

Name: NF17495_low_11
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17495_low_11
NF17495_low_11
[»] chr5 (3 HSPs)
chr5 (1-321)||(29595804-29596116)
chr5 (269-314)||(12187254-12187299)
chr5 (270-313)||(22294056-22294099)
[»] chr2 (2 HSPs)
chr2 (270-314)||(40574141-40574185)
chr2 (270-314)||(1004773-1004817)
[»] chr7 (1 HSPs)
chr7 (271-314)||(16861748-16861791)
[»] chr3 (4 HSPs)
chr3 (270-313)||(44698290-44698333)
chr3 (270-314)||(4020169-4020213)
chr3 (270-314)||(6785792-6785836)
chr3 (270-314)||(44291228-44291272)
[»] chr6 (1 HSPs)
chr6 (270-316)||(21809804-21809850)
[»] chr4 (1 HSPs)
chr4 (273-315)||(16004448-16004490)
[»] scaffold0068 (1 HSPs)
scaffold0068 (271-316)||(52081-52126)
[»] chr8 (3 HSPs)
chr8 (269-313)||(20542459-20542503)
chr8 (270-314)||(41726967-41727011)
chr8 (270-314)||(44648936-44648980)
[»] chr1 (2 HSPs)
chr1 (272-316)||(19066929-19066973)
chr1 (272-316)||(19114819-19114863)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 29596116 - 29595804
Alignment:
Q  1 ttaatatccttccgtaaagaactcaacttaatagtaagtcacatgctaagaaagacacgaccgtggagattgttgcgacaattttctaaacccataaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29596116 ttaatatccttccgtaaagaactcaacttaatagtaagtcacatgctaagaaagacacgaccgtggagattgttgcgacaattttctaaacccataaaat 29596017  T
Q  101 acacttcttacgaaatatttatgctcacagaatcacccttaagtccttaacacacaattttgagagatgactcaattgcacatcatagaaaccaataagc 200  Q
    |||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29596016 acacttcttatgaaatatttatgctcacagaatcacccttaa--------cacacaattttgagagatgactcaattgcacatcatagaaaccaataagc 29595925  T
Q  201 gcatcagcaaacgatagaggcttgccaatattcttagttggtgtttcattaagtgtgttctagggacgttggttaagaaatctacaaatagaatttttgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29595924 gcatcagcaaacgatagaggcttgccaatattcttagttggtgtttcattaagtgtgttctagggacgttggttaagaaatctacaaatagaatttttgt 29595825  T
Q  301 catggaaatataaattagaag 321  Q
    |||||||||||||||||||||    
T  29595824 catggaaatataaattagaag 29595804  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 12187299 - 12187254
Alignment:
Q  269 ttggttaagaaatctacaaatagaatttttgtcatggaaatataaa 314  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||    
T  12187299 ttggttaaagaatctacaaatagaatttttgtcttggaaatataaa 12187254  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 22294099 - 22294056
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataa 313  Q
    |||||||| ||||||||||||||| ||||||| |||||||||||    
T  22294099 tggttaaggaatctacaaatagaaattttgtcttggaaatataa 22294056  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 40574141 - 40574185
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 314  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||    
T  40574141 tggttaaggaatctacaaatagaaattttgtcttggaaatataaa 40574185  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 1004773 - 1004817
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 314  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  1004773 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaa 1004817  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 16861791 - 16861748
Alignment:
Q  271 ggttaagaaatctacaaatagaatttttgtcatggaaatataaa 314  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||    
T  16861791 ggttaagaaatctataaatagaatttatgtcttggaaatataaa 16861748  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 44698333 - 44698290
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataa 313  Q
    |||||||||||||||||||||||| ||||||| || ||||||||    
T  44698333 tggttaagaaatctacaaatagaaattttgtcttgaaaatataa 44698290  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 4020213 - 4020169
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 314  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  4020213 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaa 4020169  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 6785792 - 6785836
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 314  Q
    |||||||| | ||||||||||||||||||||| || |||||||||    
T  6785792 tggttaaggattctacaaatagaatttttgtcttgaaaatataaa 6785836  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 44291228 - 44291272
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 314  Q
    |||||||| |||||| ||||||||||| |||| ||||||||||||    
T  44291228 tggttaaggaatctataaatagaatttctgtcttggaaatataaa 44291272  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 21809804 - 21809850
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataaatt 316  Q
    ||||||||||||||| |||||||||| ||||| | ||||||||||||    
T  21809804 tggttaagaaatctataaatagaattgttgtcttagaaatataaatt 21809850  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 16004490 - 16004448
Alignment:
Q  273 ttaagaaatctacaaatagaatttttgtcatggaaatataaat 315  Q
    |||||||||||| ||||||||||| |||| |||||||||||||    
T  16004490 ttaagaaatctataaatagaatttctgtcttggaaatataaat 16004448  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 52126 - 52081
Alignment:
Q  271 ggttaagaaatctacaaatagaatttttgtcatggaaatataaatt 316  Q
    |||||||||||||| |||||||||| ||||| | ||||||||||||    
T  52126 ggttaagaaatctataaatagaattgttgtcttagaaatataaatt 52081  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 20542503 - 20542459
Alignment:
Q  269 ttggttaagaaatctacaaatagaatttttgtcatggaaatataa 313  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  20542503 ttggttaaggaatctacaaatagaaatttcgtcttggaaatataa 20542459  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 41727011 - 41726967
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 314  Q
    |||||||| |||||||||||| || ||||||| ||||||||||||    
T  41727011 tggttaaggaatctacaaataaaaattttgtcttggaaatataaa 41726967  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 44648936 - 44648980
Alignment:
Q  270 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 314  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  44648936 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaa 44648980  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 19066973 - 19066929
Alignment:
Q  272 gttaagaaatctacaaatagaatttttgtcatggaaatataaatt 316  Q
    ||||||||||||| |||||||||| ||||| | ||||||||||||    
T  19066973 gttaagaaatctataaatagaattgttgtcttagaaatataaatt 19066929  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 19114863 - 19114819
Alignment:
Q  272 gttaagaaatctacaaatagaatttttgtcatggaaatataaatt 316  Q
    ||||||||||||| |||||||||| ||||| | ||||||||||||    
T  19114863 gttaagaaatctataaatagaattgttgtcttagaaatataaatt 19114819  T

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