View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17495_low_12 (Length: 321)
Name: NF17495_low_12
Description: NF17495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17495_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 29193062 - 29192758
Alignment:
| Q |
1 |
taagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaacttttgaatctgccaaaaagaaaagtagc |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29193062 |
taagcatcttttaccttcaaagcactgatgaatgattgtgtttcatagattgatggaaacctcatagcaaacttttgaatctgccaaaaagaaaagtagc |
29192963 |
T |
|
| Q |
101 |
atcacaattatcataatatgtctgaataaggtactgtctgtgtgcgactagatttattgttcacttaataaattaaccatgtcttaccctaacgacactg |
200 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29192962 |
atcacaattatcataatatgtctgaataaggcagtgtctgtgtgcgactagatttattgttcacttaataaattaaccatgtcttaccctagcgacactg |
29192863 |
T |
|
| Q |
201 |
ttattacgttcattcaacattaacaaacgacgaatcaacactgtattgttacaagtcacgatagaatagcgataaggtgttaggaacaaatttatttcta |
300 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29192862 |
ttattatgttcattcaacattaacaaacgacaaatcaacactgtattgttacaaatcacgatggaatagcgataaggtgttaggaacaaatttatttcta |
29192763 |
T |
|
| Q |
301 |
aaatc |
305 |
Q |
| |
|
||||| |
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| T |
29192762 |
aaatc |
29192758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29182966 - 29182893
Alignment:
| Q |
1 |
taagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaactt |
74 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29182966 |
taagcatcttttaccttcaaagcactgatgaatgattgtgtttcatagattgatggaaacctcatagcaaactt |
29182893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 33632893 - 33633169
Alignment:
| Q |
1 |
taagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaacttttgaatctgccaaaaag-aaaagtag |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
33632893 |
taagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaacttttgaatctgcaaaaaagaaaaagtag |
33632992 |
T |
|
| Q |
100 |
catcacaattatcataatatgtctgaataaggtactgtctgtgtgcgactagatttattgttcacttaataaattaaccatgtcttaccctaacgacact |
199 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| ||||||||||| |||| ||||||||||| ||||||||||||| |||| || |||||||| ||||| |
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| T |
33632993 |
catcacaattatcatactatgtctgaacaaggtagtgtctgtgtgcaactaaatttattgttcgcttaataaattaatcatgcctcaccctaacaacact |
33633092 |
T |
|
| Q |
200 |
gttattacgttcattca-----acattaacaaacg-acgaatcaacactgtattgttacaagtcacgatagaatagc |
270 |
Q |
| |
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|||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||| |||| ||||||| |
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| T |
33633093 |
gttattacgttcgctcaaaattacattaacaaatgcacgaatcaacactgtattgttacaagtcgcgatggaatagc |
33633169 |
T |
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